EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

EnhancerAtlas 2.0 integrated enhancers from 12 high-throupghput technologies including P300, Histone, POLR2A, TF-binding, DHS, FAIRE, Mnase-seq, GRO-seq, STARR-seq, CAGE, CHIA-PET, and MPRA. Users could click any enhancer to view its detailed information.


HCC1954 | Homo sapiens

Cell type: Epithelial cell | Tissue: Mammary gland; breast/duct | Disease: TNM stage IIA, grade 3, ductal carcinoma.

Tissue/cell description report link(s): >>ExPASy and >>ATCC.

The tissue/cell type 'HCC1954' in Homo sapiens contains 2972 enhancers. Of these enhancers, 166 are associated with 221 SNPs. SNPs Enhancers

Show: chr5>>chr1>>chr2>>chr3>>chr4>>chr5>>chr6>>chr7>>chr8>>chr9>>chr10>>chr11>>chr12>>chr13>>chr14>>chr15>>chr16>>chr17>>chr18>>chr19>>chr20>>chr21>>chr22>>chrX>>chrY>>All


ID Coordinate SNPs TF binding sites Other Evidence
HS083-02002chr5:284900-28541000--
HS083-02003chr5:458140-45931001GeneHancer;HEDD
HS083-02004chr5:692190-69339001dbSUPER;HEDD
HS083-02005chr5:784140-785740010GeneHancer;dbSUPER;HEDD
HS083-02006chr5:897940-90060003--
HS083-02007chr5:909050-911950013GeneHancer
HS083-02008chr5:953440-95498005dbSUPER
HS083-02009chr5:990960-99346001GeneHancer;dbSUPER;HEDD
HS083-02010chr5:1009330-100959000dbSUPER
HS083-02011chr5:1126650-1132430120GeneHancer;dbSUPER;HEDD
HS083-02012chr5:1148420-115460017GeneHancer;dbSUPER;HEDD
HS083-02013chr5:1161060-116626005GeneHancer;dbSUPER;HEDD
HS083-02014chr5:1307550-130942013GeneHancer;dbSUPER
HS083-02015chr5:1325930-1330390128GeneHancer;dbSUPER;HEDD
HS083-02016chr5:1330500-133191000GeneHancer;dbSUPER
HS083-02017chr5:1344570-134479000dbSUPER
HS083-02018chr5:1515970-151836003GeneHancer;dbSUPER
HS083-02019chr5:1521730-152382002dbSUPER
HS083-02020chr5:1544470-154716006GeneHancer;dbSUPER
HS083-02021chr5:1553810-155675001GeneHancer;dbSUPER;HEDD
HS083-02022chr5:1619710-162188000--
HS083-02023chr5:1628270-162848000--
HS083-02024chr5:2225780-222673000--
HS083-02025chr5:2695260-269640001GeneHancer
HS083-02026chr5:2778610-278187004GeneHancer;dbSUPER
HS083-02027chr5:3139470-314020000--
HS083-02028chr5:4190080-419128001--
HS083-02029chr5:5271350-527258004GeneHancer
HS083-02030chr5:8259560-825979000--
HS083-02031chr5:10354030-1035432000--
HS083-02032chr5:10760500-1076112001dbSUPER
HS083-02033chr5:12058630-1205885000--
HS083-02034chr5:14143990-1414541001dbSUPER
HS083-02035chr5:14264640-1426518004GeneHancer;dbSUPER
HS083-02036chr5:15405130-1540535000--
HS083-02037chr5:16912890-1691501012GeneHancer;dbSUPER;HEDD
HS083-02038chr5:17812190-1781260000--
HS083-02039chr5:18762500-1876280000--
HS083-02040chr5:21340620-2134283004--
HS083-02041chr5:21435580-2143580000--
HS083-02042chr5:21657880-2165809000--
HS083-02043chr5:21710460-2171120000--
HS083-02044chr5:21833000-2183360001--
HS083-02045chr5:23201630-2320190000--
HS083-02046chr5:23516930-2351714000--
HS083-02047chr5:25459880-2546021000--
HS083-02048chr5:26793600-2679390000--
HS083-02049chr5:27166510-2716672000--
HS083-02050chr5:27954920-2795513000--
HS083-02051chr5:31395270-3139604000GeneHancer
HS083-02052chr5:32173540-3217391001dbSUPER
HS083-02053chr5:32444440-3244472001--
HS083-02054chr5:32855900-3285644000--
HS083-02055chr5:34007460-3400787001dbSUPER
HS083-02056chr5:34410070-3441356004GeneHancer;dbSUPER
HS083-02057chr5:34930020-3493066000--
HS083-02058chr5:36441800-3644562008GeneHancer;dbSUPER
HS083-02059chr5:36657450-3666125015GeneHancer;dbSUPER;HEDD
HS083-02060chr5:39074260-3907443000dbSUPER
HS083-02061chr5:39194450-39197360014dbSUPER
HS083-02062chr5:40797700-4079816008--
HS083-02063chr5:40952810-4095303000--
HS083-02064chr5:43121670-4312214001--
HS083-02065chr5:43396780-4339713000dbSUPER
HS083-02066chr5:43425640-43430520110GeneHancer;dbSUPER;HEDD
HS083-02067chr5:43514620-4351490000--
HS083-02068chr5:44663080-4466328000--
HS083-02069chr5:49941310-4994229000--
HS083-02070chr5:49963120-4996390006--
HS083-02071chr5:52095310-5209571000dbSUPER
HS083-02072chr5:52627200-5262789002GeneHancer;dbSUPER;HEDD
HS083-02073chr5:55303030-5530361000--
HS083-02074chr5:55771090-5577130000--
HS083-02075chr5:58580150-5858037000--
HS083-02076chr5:60577940-6057889002--
HS083-02077chr5:64703500-6470372000--
HS083-02078chr5:66510140-6651281013GeneHancer;dbSUPER;HEDD
HS083-02079chr5:67426720-6742692000--
HS083-02080chr5:67729520-6773143001GeneHancer;dbSUPER
HS083-02081chr5:68711000-6871196003--
HS083-02082chr5:68758990-6875964000--
HS083-02083chr5:72144080-7214421000dbSUPER
HS083-02084chr5:72144330-7214517000dbSUPER
HS083-02085chr5:72251960-7225280012dbSUPER
HS083-02086chr5:72698940-7269915000--
HS083-02087chr5:72794620-7279470000--
HS083-02088chr5:73334850-7333767000GeneHancer
HS083-02089chr5:74410240-7441045000--
HS083-02090chr5:76133790-7613582001GeneHancer;dbSUPER;HEDD
HS083-02091chr5:76787470-7678799000--
HS083-02092chr5:77623850-7762493014GeneHancer
HS083-02093chr5:79703970-7970406000dbSUPER
HS083-02094chr5:84655460-8465566000--
HS083-02095chr5:85344630-8534484000--
HS083-02096chr5:86283540-8628375000--
HS083-02097chr5:87956530-8795720000GeneHancer;dbSUPER;HEDD
HS083-02098chr5:90575610-9057772013dbSUPER
HS083-02099chr5:90676740-9067812000dbSUPER
HS083-02100chr5:95998200-9599960004dbSUPER
HS083-02101chr5:96271880-9627233001dbSUPER
HS083-02102chr5:96518520-9651882000--
HS083-02103chr5:99517050-9951726000--
HS083-02104chr5:99659670-9965988000--
HS083-02105chr5:108744450-10874554001dbSUPER
HS083-02106chr5:110320140-11032035001--
HS083-02107chr5:111971490-11197273001GeneHancer
HS083-02108chr5:112249770-11225006000--
HS083-02109chr5:112312680-11231338002--
HS083-02110chr5:112922500-11292334001--
HS083-02111chr5:114879490-11488021005dbSUPER
HS083-02112chr5:114992970-11499405002HEDD
HS083-02113chr5:120173130-12017336000--
HS083-02114chr5:120764750-12076496000--
HS083-02115chr5:121297760-12129793000--
HS083-02116chr5:122371780-12237220000--
HS083-02117chr5:122691980-12269220000--
HS083-02118chr5:123511810-12351234001--
HS083-02119chr5:123985390-12398735003GeneHancer;dbSUPER
HS083-02120chr5:123993740-12399715005GeneHancer;dbSUPER
HS083-02121chr5:124378590-12438177003GeneHancer;dbSUPER
HS083-02122chr5:124812580-12481454002GeneHancer;dbSUPER
HS083-02123chr5:125759380-12575994000dbSUPER
HS083-02124chr5:126113560-12611473000dbSUPER
HS083-02125chr5:126813060-12681326000--
HS083-02126chr5:126853470-12685375000--
HS083-02127chr5:130599860-13060019000dbSUPER
HS083-02128chr5:131749830-13175167005dbSUPER;HEDD
HS083-02129chr5:132176590-13217708000GeneHancer;dbSUPER
HS083-02130chr5:132297970-13229895002--
HS083-02131chr5:132436160-13243637001--
HS083-02132chr5:132791660-13279379000GeneHancer
HS083-02133chr5:132961420-13296209000--
HS083-02134chr5:133353840-13335597006GeneHancer;dbSUPER;HEDD
HS083-02135chr5:133801210-13380210004GeneHancer;dbSUPER
HS083-02136chr5:134181900-13418208000--
HS083-02137chr5:134462170-13446446002GeneHancer;dbSUPER
HS083-02138chr5:135468650-13546885000--
HS083-02139chr5:136287120-13628733000--
HS083-02140chr5:137910340-13791092004dbSUPER
HS083-02141chr5:138533830-13853395000--
HS083-02142chr5:138678310-13867838000--
HS083-02143chr5:141227940-141230270017GeneHancer;dbSUPER
HS083-02144chr5:141731160-141731640014--
HS083-02145chr5:145316260-14531738004dbSUPER
HS083-02146chr5:146277740-14627796001--
HS083-02147chr5:148725180-14872559000dbSUPER
HS083-02148chr5:148961190-14896214002dbSUPER
HS083-02149chr5:149030250-14903083000--
HS083-02150chr5:149236790-14923743000GeneHancer;dbSUPER
HS083-02151chr5:150439210-15043970000GeneHancer;dbSUPER
HS083-02152chr5:150632860-15063315010dbSUPER
HS083-02153chr5:150994480-15099596002GeneHancer;dbSUPER
HS083-02154chr5:159713710-15971554006GeneHancer;HEDD
HS083-02155chr5:160391110-16039132000--
HS083-02156chr5:161535880-16153609000--
HS083-02157chr5:169010890-16901105000--
HS083-02158chr5:169170950-16917384013GeneHancer
HS083-02159chr5:171433250-17143346000dbSUPER
HS083-02160chr5:171666570-17166678000--
HS083-02161chr5:173930530-17393162000GeneHancer;dbSUPER
HS083-02162chr5:175875470-17587559000--
HS083-02163chr5:176248410-17625070002GeneHancer;HEDD
HS083-02164chr5:176560950-17656208005dbSUPER
HS083-02165chr5:176815420-17681663007GeneHancer
HS083-02166chr5:176853900-17685428001dbSUPER
HS083-02167chr5:177367650-17736787001GeneHancer;dbSUPER
HS083-02168chr5:178052860-17805394000--
HS083-02169chr5:178977880-17897850000--
HS083-02170chr5:179050290-17905059000dbSUPER
HS083-02171chr5:179498150-17949845001dbSUPER
HS083-02172chr5:179757880-17975849000GeneHancer;dbSUPER
HS083-02173chr5:180229270-18022967000dbSUPER
HS083-02174chr5:180541990-18054271001GeneHancer
HS083-02175chr5:180618350-18061874001dbSUPER
HS083-02176chr5:180867310-18086924004GeneHancer