EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

EnhancerAtlas 2.0 integrated enhancers from 12 high-throupghput technologies including P300, Histone, POLR2A, TF-binding, DHS, FAIRE, Mnase-seq, GRO-seq, STARR-seq, CAGE, CHIA-PET, and MPRA. Users could click any enhancer to view its detailed information.


HCC1954 | Homo sapiens

Cell type: Epithelial cell | Tissue: Mammary gland; breast/duct | Disease: TNM stage IIA, grade 3, ductal carcinoma.

Tissue/cell description report link(s): >>ExPASy and >>ATCC.

The tissue/cell type 'HCC1954' in Homo sapiens contains 2972 enhancers. Of these enhancers, 166 are associated with 221 SNPs. SNPs Enhancers

Show: chr3>>chr1>>chr2>>chr3>>chr4>>chr5>>chr6>>chr7>>chr8>>chr9>>chr10>>chr11>>chr12>>chr13>>chr14>>chr15>>chr16>>chr17>>chr18>>chr19>>chr20>>chr21>>chr22>>chrX>>chrY>>All


ID Coordinate SNPs TF binding sites Other Evidence
HS083-01736chr3:2102880-210308000--
HS083-01737chr3:4817160-481894003GeneHancer;dbSUPER
HS083-01738chr3:7893350-789357000--
HS083-01739chr3:8581670-858189001GeneHancer;dbSUPER
HS083-01740chr3:8782110-878402003GeneHancer;dbSUPER
HS083-01741chr3:9885290-988557000--
HS083-01742chr3:10183870-1018399000--
HS083-01743chr3:11759740-1176068000dbSUPER;HEDD
HS083-01744chr3:12268940-1227298034GeneHancer
HS083-01745chr3:12526380-1252644000--
HS083-01746chr3:13153000-1315425005GeneHancer;dbSUPER;HEDD
HS083-01747chr3:13526550-1352751002GeneHancer;dbSUPER
HS083-01748chr3:14925360-1492682021GeneHancer;dbSUPER
HS083-01749chr3:15106300-1510656000--
HS083-01750chr3:21184790-2118555001--
HS083-01751chr3:21810450-2181067000--
HS083-01752chr3:24562420-2456285000dbSUPER
HS083-01753chr3:25824510-2582475002--
HS083-01754chr3:27562550-2756380012GeneHancer;dbSUPER
HS083-01755chr3:29817780-2981798000--
HS083-01756chr3:32148250-3214950000--
HS083-01757chr3:32461990-3246332012GeneHancer;dbSUPER
HS083-01758chr3:32558380-3255868003GeneHancer;dbSUPER
HS083-01759chr3:32612010-3261211000--
HS083-01760chr3:33156040-3315715006--
HS083-01761chr3:33799020-3379947000--
HS083-01762chr3:33840430-3384095000--
HS083-01763chr3:37285110-3728612003dbSUPER
HS083-01764chr3:40245060-4024563000--
HS083-01765chr3:42642270-4264245000--
HS083-01766chr3:44380330-4438099000--
HS083-01767chr3:45186660-4518769001dbSUPER
HS083-01768chr3:45208320-4520966003GeneHancer;dbSUPER;HEDD
HS083-01769chr3:46152210-4615432001GeneHancer;dbSUPER;HEDD
HS083-01770chr3:46420780-4642100000dbSUPER
HS083-01771chr3:46971600-4697420003GeneHancer;dbSUPER;HEDD
HS083-01772chr3:47422670-4742323001--
HS083-01773chr3:47554670-4755502003--
HS083-01774chr3:47810740-4781096001--
HS083-01775chr3:48128520-4812988000dbSUPER
HS083-01776chr3:48342140-4834278001--
HS083-01777chr3:48393650-4839479001HEDD
HS083-01778chr3:48754410-4875458001dbSUPER
HS083-01779chr3:49377050-4937735002dbSUPER
HS083-01780chr3:49415280-4941638010GeneHancer;dbSUPER;HEDD
HS083-01781chr3:49508010-4950839000dbSUPER
HS083-01782chr3:49977660-4997824001--
HS083-01783chr3:50200120-5020300025dbSUPER;HEDD
HS083-01784chr3:50638010-5063929001dbSUPER;HEDD
HS083-01785chr3:52321890-5232213005dbSUPER
HS083-01786chr3:53079090-5307983002HEDD
HS083-01787chr3:53432400-5343261001--
HS083-01788chr3:57677730-5767850000--
HS083-01789chr3:57994580-5799466000dbSUPER
HS083-01790chr3:58035280-5803910045GeneHancer;dbSUPER;HEDD
HS083-01791chr3:58292380-5829262000dbSUPER
HS083-01792chr3:64173280-6417596012GeneHancer;dbSUPER
HS083-01793chr3:64765240-6476551000--
HS083-01794chr3:69569070-6956966000--
HS083-01795chr3:71632260-7163272014dbSUPER
HS083-01796chr3:72094320-7209493000--
HS083-01797chr3:73046220-7304634000dbSUPER
HS083-01798chr3:77371910-7737233000--
HS083-01799chr3:80227500-8022771000--
HS083-01800chr3:81537230-8153744000--
HS083-01801chr3:86113730-8611395000--
HS083-01802chr3:88225610-8822581000--
HS083-01803chr3:100428570-10042865000--
HS083-01804chr3:101230930-10123193003dbSUPER
HS083-01805chr3:103550160-10355036000--
HS083-01806chr3:109709440-10970966000--
HS083-01807chr3:110726510-11072697000--
HS083-01808chr3:111552360-11155268000--
HS083-01809chr3:111698050-11169820000dbSUPER
HS083-01810chr3:112395260-11239628007GeneHancer;dbSUPER
HS083-01811chr3:112710180-11271048000--
HS083-01812chr3:113233420-11323374000--
HS083-01813chr3:118016650-11801685000--
HS083-01814chr3:119395880-11939605007dbSUPER
HS083-01815chr3:122233080-12223360002--
HS083-01816chr3:123324340-12332565002GeneHancer;dbSUPER
HS083-01817chr3:124032690-12403290000--
HS083-01818chr3:124834850-12483645004GeneHancer;dbSUPER
HS083-01819chr3:125365590-12536761001GeneHancer
HS083-01820chr3:126499390-12650216001GeneHancer
HS083-01821chr3:126761810-12676306001GeneHancer
HS083-01822chr3:127993170-12799444013GeneHancer;HEDD
HS083-01823chr3:128945240-12894576000GeneHancer;dbSUPER;HEDD
HS083-01824chr3:131017260-13101746001--
HS083-01825chr3:131625770-13162600000--
HS083-01826chr3:131696800-13169742001--
HS083-01827chr3:133182170-13318295001GeneHancer;dbSUPER
HS083-01828chr3:134069220-13407119001dbSUPER;HEDD
HS083-01829chr3:134674300-13467451000--
HS083-01830chr3:135231850-13523205000GeneHancer
HS083-01831chr3:135626780-13562772002GeneHancer
HS083-01832chr3:137906440-13790664000--
HS083-01833chr3:138312490-13831303000dbSUPER
HS083-01834chr3:138551710-13855202000dbSUPER
HS083-01835chr3:141084780-14108746003dbSUPER;HEDD
HS083-01836chr3:142315350-14231573000--
HS083-01837chr3:143478920-14347914000--
HS083-01838chr3:144517840-14451852000--
HS083-01839chr3:144769600-14476983000--
HS083-01840chr3:145552020-14555223000--
HS083-01841chr3:146262020-14626225000dbSUPER
HS083-01842chr3:146652400-14665262000--
HS083-01843chr3:148950400-14895060000--
HS083-01844chr3:150087890-15008910002GeneHancer;dbSUPER
HS083-01845chr3:151021980-15102295000GeneHancer;dbSUPER
HS083-01846chr3:152411830-15241240000--
HS083-01847chr3:152927210-15292808001GeneHancer
HS083-01848chr3:156892140-15689350002dbSUPER
HS083-01849chr3:158448770-15844992000dbSUPER
HS083-01850chr3:163843710-16384392000--
HS083-01851chr3:166333690-16633389000--
HS083-01852chr3:169363840-16936406001--
HS083-01853chr3:169898470-16989948002dbSUPER
HS083-01854chr3:171357200-17135757000--
HS083-01855chr3:171526960-17152818000dbSUPER
HS083-01856chr3:171873520-17187493001GeneHancer;dbSUPER
HS083-01857chr3:174157790-174159760016dbSUPER
HS083-01858chr3:175941210-17594176000--
HS083-01859chr3:176862970-17686445000GeneHancer;dbSUPER;HEDD
HS083-01860chr3:177238950-17724140001GeneHancer;dbSUPER
HS083-01861chr3:180630520-18063085000--
HS083-01862chr3:181763140-18176505004--
HS083-01863chr3:182371080-18237171000--
HS083-01864chr3:182697710-18269827001--
HS083-01865chr3:184282620-18428582004dbSUPER
HS083-01866chr3:185254850-18525587001GeneHancer;dbSUPER
HS083-01867chr3:186315980-18631618000GeneHancer
HS083-01868chr3:186779810-18678362006GeneHancer;dbSUPER
HS083-01869chr3:186903390-18690527003GeneHancer;dbSUPER
HS083-01870chr3:189644670-18964735012GeneHancer;dbSUPER;HEDD
HS083-01871chr3:190284430-19028507000GeneHancer;dbSUPER
HS083-01872chr3:190954530-19095628001GeneHancer
HS083-01873chr3:193311200-19331134000--
HS083-01874chr3:193508670-19351004003GeneHancer
HS083-01875chr3:193568990-19357250012GeneHancer;dbSUPER
HS083-01876chr3:193720650-19372137003--
HS083-01877chr3:193854840-19385547000dbSUPER
HS083-01878chr3:193858400-19386083002dbSUPER;HEDD
HS083-01879chr3:194591760-19459345008GeneHancer
HS083-01880chr3:195361450-19536323000HEDD
HS083-01881chr3:195385040-19538602000--
HS083-01882chr3:195447960-19544852000--
HS083-01883chr3:195667820-19566818000--
HS083-01884chr3:195680910-19568193000HEDD
HS083-01885chr3:195716240-19571706000--
HS083-01886chr3:195808050-19580870001dbSUPER
HS083-01887chr3:195834970-19583588000GeneHancer;dbSUPER
HS083-01888chr3:196467030-19646797002--
HS083-01889chr3:197044340-19704505000GeneHancer;dbSUPER
HS083-01890chr3:197353740-19735465000--
HS083-01891chr3:197379910-19738221001GeneHancer;dbSUPER
HS083-01892chr3:197732670-19773287002--
HS083-01893chr3:197884540-19788525000GeneHancer