EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM154-12029

Organism

Mus musculus

Tissue/cell

V6.5

Coordinate

chr7:28144070-28144760

Target genes

Number: 11
Name	Ensembl ID

BC024978	ENSMUSG00000078786
Snrpa	ENSMUSG00000061479
Itpkc	ENSMUSG00000003752
Numbl	ENSMUSG00000063160
Gm15570	ENSMUSG00000083622
Ltbp4	ENSMUSG00000040488
Shkbp1	ENSMUSG00000089832
Spnb4	ENSMUSG00000011751
Blvrb	ENSMUSG00000040466
Sertad3	ENSMUSG00000055200
Pld3	ENSMUSG00000003363

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Arid5a	MA0602.1	chr7:28144139-28144153	CTAATATTGAGAAG	+	6.13
RFX5	MA0510.2	chr7:28144519-28144535	AGTTACCATGGCAAAG	+	6.08
RREB1	MA0073.1	chr7:28144099-28144119	CCCCTACCCACCCCCAGCAC	+	6

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_10263

chr7:28144276-28146461

Embryonic_stem_cells

Enhancer Sequence

AATCCCTTTA GCTCAAAACT CTGACTTGCC CCCTACCCAC CCCCAGCACA CTCAGGATAA 60
AATCTTCCCC TAATATTGAG AAGTCCAGCT GCAGGGGACC TTTTTGGAAC CATTTACCTC 120
ACTTCGGCTG TCCTCCTGCA ATTGGCTCTC TTAAACCATT GCAATTCTGT CCTCTGGGAC 180
ACTCAGCCCT GATCACTCAT TTTGTTCTGT TTTGTGTTAA TTTTGCTTGT TTGAATATAT 240
GCCATGTGTG GATATATGCT CTTAGGAGGC AGAAGAGGGC GCTAGAGCCC CAGAAGCTGG 300
AGTTAAAAGG GAGTTGTGGT ATCATGGGTG CTGGGAACCA AACTTGGGTC CTCTGGAAGA 360
GCAGTAAGCA CTCTTACCTA CTGAGCCATC TCTCTAGAAC CTTCATCACT CTTTTTTAAG 420
CTTACACCCA TCATCTTTCT GGCCTTCTGA GTTACCATGG CAAAGAAGAC AGACCTAGTT 480
ATCATGGCTA GCAAGCACCT GCCCTGAATC CCTCCCCATG ACCCCCGACT CCTTAAGCTC 540
CTCGGGGCTC TCACTGCTTT CCTGTTACAA CCCTGACAGG TCCAACCTGT GTGGTTCCTT 600
CTATAGTCCC GTTATTTTGA TTCAGGAACC ACCCTGGGAG CTAAGCCACT AAGCTAAGGT 660
CAACCTGTGG GATGAGAGGA TCAGATCTTA 690