EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM150-15730

Organism

Mus musculus

Tissue/cell

Thymus

Coordinate

chr9:44790020-44791460

Target genes

Number: 19
Name	Ensembl ID

Cxcr5	ENSMUSG00000047880
Ddx6	ENSMUSG00000032097
Phldb1	ENSMUSG00000048537
Arcn1	ENSMUSG00000032096
Ift46	ENSMUSG00000002031
Tmem25	ENSMUSG00000002032
Mll1	ENSMUSG00000002028
Atp5l	ENSMUSG00000038717
Ube4a	ENSMUSG00000059890
Cd3g	ENSMUSG00000002033
Cd3d	ENSMUSG00000032094
Cd3e	ENSMUSG00000032093
Mpzl2	ENSMUSG00000032092
Mpzl3	ENSMUSG00000070305
Amica1	ENSMUSG00000048534
Scn2b	ENSMUSG00000070304
Scn4b	ENSMUSG00000046480
Tmprss4	ENSMUSG00000032091
Il10ra	ENSMUSG00000032089

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MITF	MA0620.2	chr9:44790336-44790354	CTTGGTCATGTGACCACC	+	6.27
MITF	MA0620.2	chr9:44790336-44790354	CTTGGTCATGTGACCACC	-	6.27
YY1	MA0095.2	chr9:44790777-44790789	GCAGCCATTTTG	-	6.52

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_12412	chr9:44787035-44791311	Spleen
mSE_12958	chr9:44786103-44791731	Thymus

Enhancer Sequence

AAGGTAAGGG AGGCCTCTTC AGCTGTGTGG AGGATGGACC CGTGAGGGGC ATTGTCACTG 60
GGAGAAGTCC ACTGGATAGT GCATCTCGTT TACCAAGCTG GGGAAGATAA AAGGGCAAGG 120
CTAGGGCATA GGAAACAAGC ATTCGGCTTT GACCTGCTCT AGTCAAGGCT CACATTGGTC 180
GTGATGGTGT CCCCAAACTC CTTGGACCAG ACATTTGTAG GAAATGGTTC CATATTGTAT 240
GTCCCTAGGC CTAAAACTAG TAATGAAGTT ATACCCATTG CATCGTCTAA GGCAAATGGC 300
CTCTTGGAGT AGGATTCTTG GTCATGTGAC CACCCGGAGC CACGGCTCGG CTCAGAATTT 360
AGAAGCGATC TTTAAGAGAA AAGTTAGCTT TAGCTGAATG GGAAGGACAG GCAGAGGGTA 420
TGTTATATTA AAGTCTGTAA GTCCTAAGTG CCAACTCTTT CTCAGTTTGT TTGCTTTTAA 480
AACAGAAAAG CAGGCTGGGT AGATAACACG GGGGTAGGAC TCAAGGAGTG CAAAAAACCC 540
AAACCAAACA AACTCCAAAA TAACACTGCG AAGCTCACAT CTCAGAGCTC AGCCGTCCCA 600
GGAAAACTGG GTCAAATGGT TACTCTAAGA GCTGTCCTGG CCACCAGAGA TTTCTACTGG 660
ACGTAACTCC AAAGAAGACG GGACTTTAAG AGGAGAAGAA TTACATACAC CTCTCTTCTC 720
CAGCATGCTC ATATATGTTC CTGCTTCAGA GGCAGGGGCA GCCATTTTGG AGTTTTCTGG 780
AGGGTGCTCT TTTGTTCAGA TCAGTAACTA AGTAATGAAG CTCAGAGACA CACAGACTCC 840
AGGGAAGGCT GGCTGTAGAC ATAAGGCATG GCAGTGCCCT CTGGGCTGGG AAGGCTCACT 900
GTGCCCACAG CCTTTCACCT CTCCCACCAG ACTTGATGTA CTTAGAGCCT CAGGAGCAGA 960
TTTGATACAT ATTGGTGGCC CTTTCTCCTT AAGCAAGCAT GGCAAAGACA GTAAAAATTA 1020
TAGGGGCACA GGAGGGACAG GAACCGCTCA ACCCAGAAAC TAGCTAGGGT TTGAGAATTT 1080
CAGCACAATT AATGTTCTCT GTATAAGTTG TCTACAAGCT GCTCTTTTCT GATACGGGTA 1140
TTTTACTATG CTGCTATTTA AAATAGCAAC AAGTCAGGCT TAAGGCTGGA CTGTGTATGA 1200
CCTTGGGCAG GGCCTCATTC CTCTCTAGAA CATTCTCTAA GAGCCTCATA AATACGACTA 1260
CTTTCTTTGT TTGCTGTGAA GAGCTCCTGC ATCTGGCATA CCCAACTCTA AACATTTGTT 1320
CCATCCATTG TAATTCTGTT TGATGCCCAT ACTATTCTGT GAACTCATTT AGGTTTCTTA 1380
ACAACTCTGG GGACAAGAAC TTCAAGACCC ACCCAAGCAG TGTATTCAGC TGTTGTAAAG 1440