EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM150-13843

Organism

Mus musculus

Tissue/cell

Thymus

Coordinate

chr7:28142460-28143070

Target genes

Number: 14
Name	Ensembl ID

Cyp2f2	ENSMUSG00000052974
Cyp2t4	ENSMUSG00000078787
Rab4b	ENSMUSG00000053291
Mia1	ENSMUSG00000089661
Snrpa	ENSMUSG00000061479
Itpkc	ENSMUSG00000003752
Adck4	ENSMUSG00000003762
Numbl	ENSMUSG00000063160
Ltbp4	ENSMUSG00000040488
Shkbp1	ENSMUSG00000089832
Spnb4	ENSMUSG00000011751
Blvrb	ENSMUSG00000040466
Sertad1	ENSMUSG00000008384
Hipk4	ENSMUSG00000040424

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MAFF	MA0495.3	chr7:28142888-28142903	GTGCTGACTCAGGAA	+	6
SPI1	MA0080.4	chr7:28142768-28142782	TACTTCCTCTTTAC	-	6.05
SPIC	MA0687.1	chr7:28142768-28142782	TACTTCCTCTTTAC	-	6.53
ZNF740	MA0753.2	chr7:28142709-28142722	GGGGGGGGGGGGG	-	6.03

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_10263

chr7:28141048-28143935

Embryonic_stem_cells

Enhancer Sequence

CATCTCCTCC TGACGGAAGA CGCAGGACAA GTCCATATTT GGAAGAGGAA CTCAACCACA 60
CCGCCCTCCC TAGCTTCACT TTCCTGTTAG CAGGATAATG CTGACAGTAA GGATAAAAGA 120
ACAGTTACAT GCCCCAGACT CCTCTCTAAG CACTTCTGTG GATGCACCCC CTTAAACAGA 180
ACCAATAGGA TTATCTATAA AGCAGAGACC ACCTCCACAA GCAGAGAGAA ACAATGCAAA 240
TGAAGTACTG GGGGGGGGGG GGAGCTTGCA GAGACCTGAC ACCAGGCCTC TTGCTCATTG 300
GTCCAACTTA CTTCCTCTTT ACAAAAGCCT TGAGATAAGT CATTTTGGAA CCGCAAGAGG 360
ACCGGGTAAA CAAAGGTATG CTGGAGCCTA ATGAACAGTG AGTGCTTCCT CCCTCAGGAG 420
GAAGGAGAGT GCTGACTCAG GAAGGCTGTC CTCTGCACCC AAGGCACAGC ACATGGGTGA 480
CAATACGCAT ATCCATCAAC ACACACACAC ACACACACAC AAATAAAATG TACTGGGGCA 540
GGGTGGTGGA GCACCCCTTT AATCCCAGCA CTTAGGAGAA AGAGGCAGGA GGCTCTCTCT 600
GAGTCTGAGG 610