EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM150-11410

Organism

Mus musculus

Tissue/cell

Thymus

Coordinate

chr4:129246970-129248300

Target genes

Number: 18
Name	Ensembl ID

Sync	ENSMUSG00000001333
Rbbp4	ENSMUSG00000057236
Zbtb8os	ENSMUSG00000057572
Bsdc1	ENSMUSG00000040859
1700125D06Rik	ENSMUSG00000078554
Marcksl1	ENSMUSG00000047945
Hdac1	ENSMUSG00000028800
Lck	ENSMUSG00000000409
Fam167b	ENSMUSG00000050493
Eif3i	ENSMUSG00000028798
2510006D16Rik	ENSMUSG00000028797
Iqcc	ENSMUSG00000040795
Ccdc28b	ENSMUSG00000028795
Txlna	ENSMUSG00000053841
Kpna6	ENSMUSG00000003731
Tmem39b	ENSMUSG00000053730
Khdrbs1	ENSMUSG00000028790
Ptp4a2	ENSMUSG00000028788

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr4:129247764-129247774	GGGGCGGGGC	-	6.02
Stat4	MA0518.1	chr4:129247415-129247429	TTTCCAGGAAGTAA	+	6.01
ZBTB18	MA0698.1	chr4:129248045-129248058	CAACATCTGGCTA	-	6.1

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_01470	chr4:129233446-129262849	Th_Cells
mSE_12151	chr4:129247027-129248120	Spleen

Enhancer Sequence

CCCACTCCTG CACACACCTT GCCCCAGAGT GAAATTTTCT CTTCTATTCT ATTTGTTTTT 60
TTGATTTTTT GAGACAGGGT TTCTCTGTGG AACCCTTGTT GTCTTTGAAC TAGCTCTGTA 120
GACCAGGCTG GTCTCCGACT TACAGAGATC TGCCCGCCTC TGTCTCCGTG TGGCGCCATG 180
CTTGGTCACA CTGCAATTAT CTAAGTTGGC CAATGTACTG ACAAAAATGA AGTGGGCCTC 240
TCAAATCCTC TGGTCTAAGG CAGGCTGACA GAGCGGAGCA GGCTGGGAAC AGTCCCCATC 300
ATATAGCTCG CCCTCTGTGA CTGAGGGCAG GGTGTCCCTT GGTGGGTTGC TTCATCTTCA 360
CCCAAGGCTG TAAGTAAGGC CTGCTGCCTG CTGTCTCTGC TCAGTTCGGT CTGCAGCTCC 420
CTACCACACA TTCTCGAAGC AACACTTTCC AGGAAGTAAC ATGAAAATCA ACGCCATTAC 480
CGGTTCACCA AGCTAACGTC AGAGCCCTGT ATGGACAGGG GAGATTCCAA GATGCATCAA 540
GCTAAGCACA CTCTGCAGCC AGAAGTGAAC CTGCATTCAA ATGTGTCTAG AGGCCCAGGT 600
CTCATGGCAG TCATTATGTC ATAGTAATTG ATTTGCATGA TGCCATGTAA CCCTCATTGG 660
TAGTCCAATG AAATAAATGT CATTATCAAC CTCATGTTAC AGATGCGAAA CTGAGGCTGA 720
AACTGGGCAA AACAATTTGC CTGAAGCCTC CTAAAAAAAT TTAGCTGACC CTCGGTCTGG 780
TCTGCCCTGC TCCAGGGGCG GGGCTTTGAC CCACCTCTCA GCAGAACCAC CTGACAATCT 840
ATCCAATCAT CTGTCTGGAG GCAGATGGCT CCCAGGGACA CATCCCAGAA AAGGGATGAA 900
AGAGACATCT TTCGATGCCT CTGTACTGTT TGGCTTTAAA AACAAAACCA AGCCAGCCCT 960
GTGCTAATTT TGTAACAGCA AAATAAAAAC AACAAATTCA CCGCCAAAGC AAAGCTCTAT 1020
TAAAAACATA ACCCACCCAC CCCTTTTTTT CTTTTTTTTT TTTCTTTTTT TCAGACAACA 1080
TCTGGCTACG AAGCCCAAGC TAGCCTCATA CTTCCCATCC TGTCGCCATC TCCTGAGAGC 1140
TAGGGTAGCG AGTACCACCA CTGTCCATGA GCGACAATCC TTCAAAAATG TTCCGACCAC 1200
ACAGCTCCCC TGCCCATTCA TCCCAGGCCT GGAATGGGTG GTAGAGGGGA AAAATTATAG 1260
TTTTGTGTCT AAGAAGTTTA GGAAATCCTG GATCAGACAA AATGAAGCAG GCTTCTTCTC 1320
TGCAGAGATT 1330