EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM150-08312

Organism

Mus musculus

Tissue/cell

Thymus

Coordinate

chr19:4103480-4104320

Target genes

Number: 20
Name	Ensembl ID

Suv420h1	ENSMUSG00000045098
Chka	ENSMUSG00000024843
Aldh3b1	ENSMUSG00000024885
Doc2g	ENSMUSG00000024871
Gstp2	ENSMUSG00000038155
BC021614	ENSMUSG00000058216
Cdk2ap2	ENSMUSG00000024856
Pitpnm1	ENSMUSG00000024851
Aip	ENSMUSG00000024847
Cabp4	ENSMUSG00000024842
Coro1b	ENSMUSG00000024835
Carns1	ENSMUSG00000075289
Tbc1d10c	ENSMUSG00000040247
Ppp1ca	ENSMUSG00000040385
Rad9	ENSMUSG00000024824
Clcf1	ENSMUSG00000040663
Ssh3	ENSMUSG00000034616
Ankrd13d	ENSMUSG00000005986
Adrbk1	ENSMUSG00000024858
Kdm2a	ENSMUSG00000054611

TF binding sites/motifs

Number: 11

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Ascl2	MA0816.1	chr19:4103901-4103911	AGCAGCTGCT	+	6.02
Ascl2	MA0816.1	chr19:4103901-4103911	AGCAGCTGCT	-	6.02
Myog	MA0500.1	chr19:4104025-4104036	CTGCAGCTGTC	-	6.62
REST	MA0138.2	chr19:4104141-4104162	CTTAGCACCCGGGACAGCCCT	+	6.11
Tcf12	MA0521.1	chr19:4104025-4104036	CTGCAGCTGTC	-	6.14
ZNF740	MA0753.2	chr19:4103881-4103894	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4103882-4103895	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4103883-4103896	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4103884-4103897	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4103885-4103898	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4103886-4103899	CCCCCCCCCCCCC	+	6.03

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_01385	chr19:4093691-4170314	Th_Cells
mSE_03881	chr19:4098197-4103882	Cerebellum

Enhancer Sequence

CGTAGGTGAG CATCCCGATG AGGAACATCC AGCGCAGCGC GCACTCGTGT GGCCCGTGTT 60
TGCAGCCAGG AACGCTTCCG TTCACACAGT GGAGGGGAGA CGGGGAATAG TGGAGCCTGG 120
CTAGGAATCA AGGGCACCTG CTTTGAGGTA CCTGAAAGAA TTAGGAGGGC AAGCAGCTGG 180
CAGCATGGTC TCTGAAGCCC ATGCTATCTC TGATACTCAA CAACGATGCA CCTCTGTGAA 240
GTCGCGATGA GTTTGGCAAT ACTGAGAGGC TCTCGGGAGA TTTGCTGAGG ATTGCAGGCC 300
AAGAAGCGCA TTTGATTTCA TTACTGTGTT CCTCAGGGTG GCCTCCTTTC CCCAGCTCTA 360
TGGCCCTGAT ACTGAAGCCC CAGTTTAAGC CTCTTCTGAC TCCCCCCCCC CCCCCCCCCA 420
GAGCAGCTGC TGAGCCCTGC TTCCTTGTCA GGTCTGAGAG AGGGCCACTT GCACACACAG 480
AGAAGAAACA TCCCCAGGTG GCAGAGCCCC ATAGCCCAGG TTCTACTTCC TCCACTGCCG 540
ACCCCCTGCA GCTGTCCCAG CTGGGAGGCA ACTCAGCACC TTAATGTTCC TTTCTGACAC 600
TAGAAAAGGA GGTGAGAACA GTGACAGCCA GTGTCTGAGT GAGAGTCACT GCAGGATCCC 660
CCTTAGCACC CGGGACAGCC CTTTAAGACA AGGGCTACTA CCGTTCCCAT TTTGCAGATG 720
AGGACACTGA GTTTAGAGAG CGATGCAGAC TCCCCTGTAA TGCTTTTGGG AAAAGCGCTA 780
GTAGGAAAGT GAAATCTCCA ACATGTAGCC TCTGTTAGGA CGCTAATGCA TTTCCGTCCG 840