EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM150-03038

Organism

Mus musculus

Tissue/cell

Thymus

Coordinate

chr11:101004510-101005620

Target genes

Number: 20
Name	Ensembl ID

Dnajc7	ENSMUSG00000014195
Rab5c	ENSMUSG00000019173
Stat5b	ENSMUSG00000020919
Stat5a	ENSMUSG00000004043
Ptrf	ENSMUSG00000004044
Atp6v0a1	ENSMUSG00000019302
Mlx	ENSMUSG00000017801
Psmc3ip	ENSMUSG00000019303
Fam134c	ENSMUSG00000017802
Tubg2	ENSMUSG00000045007
Cntnap1	ENSMUSG00000017167
Plekhh3	ENSMUSG00000035172
Ccr10	ENSMUSG00000044052
Ezh1	ENSMUSG00000006920
Ramp2	ENSMUSG00000001240
Vps25	ENSMUSG00000078656
Ccdc56	ENSMUSG00000017188
Becn1	ENSMUSG00000035086
Psme3	ENSMUSG00000078652
Rnd2	ENSMUSG00000001313

TF binding sites/motifs

Number: 11

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr11:101005488-101005506	TCATCCTTTCCTCCTTCC	-	6.19
RFX1	MA0509.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.25
RFX1	MA0509.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.25
RFX2	MA0600.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.53
RFX2	MA0600.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.53
RFX3	MA0798.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.18
RFX3	MA0798.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.18
RFX4	MA0799.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.56
RFX4	MA0799.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.56
RFX5	MA0510.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.6
RFX5	MA0510.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.6

Enhancer Sequence

TTTCTCTTGT TCTTTCTTTC TTTTTTCTAG TTTTTAATTG TGCCTGTGTG AGGCGGGTGT 60
CTGTGCATGT GTGTGCAAGT GTCCTTGGAT AACTGACATG TCTGGTCTCT TAGAACTGCA 120
CTTATACCTT AGTGGTGGCG CACGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGGCG 180
GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAT 240
ACAGAGAAAC CCTGTCTCGA AATACCAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 300
AAAAACTGCA GTTACAGGCA GCTGTGAAAC ACCTGACATG GATGCTGGGA ACCAGACTCT 360
GGTCCAGTAC TTGTTCTTTT GCTTAGCTGC CCTGGGTGAA CAGTAAGAGC TCTTGACCCT 420
CTTAACCACT GAGCCATCTC ACCACTGCAC CCCTACCCCA GTGCTTTCAA CCTTAAACTT 480
GACCGCTTAT TCCTGTGACT GCATTTCCGG CACCTCTGTT TCCTCTTTGT CTCACTGCGT 540
AGGGCTGCTT TCTCTCTACC AAGTCATCTA TGGCTTTGTG GATTTTACAT CCATCTCCCT 600
GGAGTCTGGA TGACCCGATC TAATTATTTT TTTACTCCGT CATCTTCAGC TGACCCCTCT 660
GATGAAACCC GGGACTCTCC CTGCCTGCCT GCTCTCTCAG TCCTCCAGCG GAGCACCGAA 720
GGAGTCAGGG CAAGCCTAGG CGGCAAACAG TTGCCATGGC AACTCAATTT CCAACCAGGC 780
GATCTTCCTC TACCCCCTGG GCTGAGAGTA CTGGCCTGCC CTCGCCAGCC CTCTCCTGTT 840
TCCTACCTTT GATTCCCTCC CCTCTCCTCC GAATTCAGAA CTTCACTCCT ACTTGACAGT 900
GAAAATACAA GCGTGCTGAA GCCCCGTCAA CTTCCTGTCC CCCCACTTCC ATCTCTACTG 960
ACTTATTTTT AACTACCCTC ATCCTTTCCT CCTTCCGGTA GTTAATCTCT CCACCTGAGC 1020
CCTGAATCCA GTAGCTCCAC CTCCTCAAAG ACCTTGGAGC GCCAAACCCC TGTCTCTTCA 1080
GTATCTTTTT TTTGTTTTTG TTTGTTTTTC 1110