EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM147-13262

Organism

Mus musculus

Tissue/cell

Th1

Coordinate

chr3:88227340-88228640

Target genes

Number: 16
Name	Ensembl ID

Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Bglap	ENSMUSG00000074489
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Gm10704	ENSMUSG00000074479
Ssr2	ENSMUSG00000041355
Arhgef2	ENSMUSG00000028059

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr3:88227403-88227415	AAACAAACAAAC	-	6.32
NR2C2	MA0504.1	chr3:88228063-88228078	GGGGGTCAGAGGGGA	+	6.04
Nr5a2	MA0505.1	chr3:88227673-88227688	ACTGGCCTTGAACTT	-	7.44

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_08821

chr3:88224433-88230228

Liver

Enhancer Sequence

TCTACAGAGT GAGTTCCAGG ACAGTCAAGG CTACACAGAG AAACCCTATC TCAAAAAAAA 60
CCAAAACAAA CAAACAAAAA ACCCCAACCA AACCAACAAC CAAAGCATTG TTTGTGAATC 120
ACTAAGTGCC TTCTGTACAT CCCATCAGAT CGCCCAGACC AGGGAGCGTT TTATGCTTGA 180
AGTTATCAAA TGAAATGGAA AGTAGACTAG CTCAAATATG CACGTGTTAC AACTCTCCTC 240
ACATAAGCAA AACTCAGAAC TACTCTCTTG CTTTGCTTTG CTGCCTTTGC TGCTGTTTTG 300
TTGTTTGTTT GGTATGAGTT TCAAGTGGCC CAAACTGGCC TTGAACTTCT GAGCCTCTTA 360
TCTGCAATTC CTAAATGCTG GGATTATAGA TGTGAGCCAC GATAACACTT GCCGGGTTTA 420
TTCTGAGCTG TGTGCTATGC GCATTCTACC AACTGAGCTA GATCTTTGGC CCTTGGAGTT 480
AACAACTGTG GAAGGATTTT GCTAACAGTA AAGTATTTCC CTTACTGCAC AAGGTTCTAC 540
TGAGCAGGGT TACTCCAAGT CCTCACCAGC CATCTGGTCC ACAGATGGCA TGGACAATAT 600
AGTTGTCTAT ATAAGAGCAG ACCTAGGTGT GGTAGCACAG GTCTATCACA CTAGCCCAAG 660
GGGGCTGAGG CAAGAGAAAC AGGAGTTTAA GGTCAGCCTG GTTTACACAG TAAAACCTGT 720
CTTGGGGGTC AGAGGGGACT CAGGCCATAC TGTAAACCTG CTGATAAGAA ACAACACTCT 780
AACATCTCTA GATAATATAT GGATTGTAAA ATGTGAGAAG CATTGCTTTA CTTATTCCAG 840
CTTGTCAGTT TTATAAGAAC TATAACTATT CTCAGATTCC AGCATCATTA GAACCAGGTT 900
AGGAGTCCTC TGATTCCATC CTTGGTAGTG GACACAATGA TGATTAACTG GTCCATTCCA 960
ATCAGCCACT CCCACCACAT CGGGTCAACT CCTGACCAGA CACCAGGCTG CCATTCTCAG 1020
ACAAAACAGA TACTTCCCAG CACCCTCTTT TCTTTCTCTC TGCCACTTCA GGTTCTGCAT 1080
TCTGGGAGCT GTCACCCACA TAAACGCGAA TTAACTGTCC CGCTAGCTAT TCATTGCCCT 1140
TCACTAGGTC CTGACTATGT CGCCTCCCAA TCTAAGCCTC CTCCCTCCGG CATGGTGAGG 1200
TTCCACCTAG TCTTCATTGG TCTTCAATAG ATTTCCACGT GATCCTCCAT CACACACACC 1260
ACATGACAAT CCCCTCCACA CACTCCACGT GACACCCTCC 1300