EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM146-10056

Organism

Mus musculus

Tissue/cell

Testis

Coordinate

chr3:88161740-88162440

Target genes

Number: 18
Name	Ensembl ID

Mrpl24	ENSMUSG00000019710
Gpatch4	ENSMUSG00000028069
Iqgap3	ENSMUSG00000028068
Mef2d	ENSMUSG00000001419
Rhbg	ENSMUSG00000001417
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Bglap	ENSMUSG00000074489
Bglap2	ENSMUSG00000074486
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Ssr2	ENSMUSG00000041355

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr3:88162164-88162182	GGAAGGAAGGCTGGGAGC	+	6.14
SP2	MA0516.2	chr3:88162188-88162205	GAGTGGGTGGGGCTTTG	-	6.49
ZNF263	MA0528.1	chr3:88162177-88162198	GGAGCAGGAAGGAGTGGGTGG	+	6.25

Enhancer Sequence

ATTATCAACC AAGCAACTGG GATTGTAGAG TTGTCTGGTT TGGACTTATT AAAATGACAT 60
CTGAGGACAC CTGGCTCACC TGAGAGCCTC GGTGGTGCCA GTTACCTCAC AGGACAGAGT 120
GTGAAGGGCT TGGCACTTCA TTTTGAAGCT GAAAGAATAA GGTGAGGATG GGCATTGGAT 180
GTTAGGGAAC CTGCTGTGGC TGTGCTTAGA GAGCAGGGTG AGTCAGAACC AGAGTGGCGT 240
GGCTGAGAAT ACCCACCCTG GAAGGGTTGT TGTTGGGCTC AGCCTCACTT CTGGGAGAAG 300
GGAAGGATGT TGGTATGCTG GTCAGAGGGT TCACTTGACA AGGCCAGCCT GCTGAGAACG 360
TATGTGCTGA GAGGGAGACA ACCACCCTGA GAATTCTGAC TTTGGCAGTT GGTTCACTTA 420
CCAAGGAAGG AAGGCTGGGA GCAGGAAGGA GTGGGTGGGG CTTTGGCAGG CAGGTGCACT 480
TGTGGACAGG GTGGGCTGCT CTCTACATGG GAAAACACTG GCAGGTCAGG AGCGGGCCAG 540
GGTGTGTGTG CTTGGTATCT CCAGAGAGGG ACTGGCTAGG AGGAACAGAG GTGAGGACTT 600
ATATCACAAC AGGTAGTGTC TTCCATGCTA AAAATGGTCA GCTGTCTCCT GTACCAGGAA 660
TGACCTACCA TGGGTCGGCC ACGGGGATTG TAGAATGAAT 700