EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM139-00635

Organism

Mus musculus

Tissue/cell

Rib_chondrocyte_P1

Coordinate

chr1:172039530-172041570

Target genes

Number: 4
Name	Ensembl ID

Rgs4	ENSMUSG00000038530
Hsd17b7	ENSMUSG00000026675
Uap1	ENSMUSG00000026670
Uhmk1	ENSMUSG00000026667

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

E2F6	MA0471.1	chr1:172040216-172040227	CCTTCCCGCCC	-	6.62
ZNF263	MA0528.1	chr1:172041502-172041523	AGAGGAAGAAAAGGAAGAAGA	+	6.79

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_05758	chr1:172038879-172041926	E14.5_Limb
mSE_09998	chr1:172038691-172042434	MEF

Enhancer Sequence

CTTAAAACCC TTTCCTGTAA AACAGGAACG GTGCCTTACA GAACCGTGAA TCAAATAACA 60
GGAAAATATC TGGAGGCTGA TCAGAGCAAG GACTCAAATG TTAATTTTTT TTTGTTTCAT 120
TTGTGCACAC ACACGTGCAC GCACACACAC GTGCACACGC GCACACCAAC ATTGACACAC 180
ACACCAAGGA CCACCAGCTG ATGAACCACT TCTACCATTT TTTTATAGCT GATAAACGCC 240
CGGAGAAGAC TTGCCCCATT GTCTCTTCTA AATCTTAAAA ATAAGCCTGA AGGCATAAGC 300
GTGGAGTGCA ACAGGCACTA GGGCCGTGCT AACATGTCTG AAATCTGTGT AATGAACGGG 360
TCAGAAGAGA CCGCAGCAAT TGCAAAGACC CCCCTTTCCA CGCTCCAATT GCCACTAGGG 420
AAGGATGCGG AAAGCTGAAC AGTTAAGATG GTGCTAAAGG CGCCGCTGCC TTGAGTTCTC 480
CAAACTCTCC TCAAATGGCT GACCTAAGTA TGTCTGCCAC TTGCAGAGAA CTCTGTCCCT 540
TAGATGGGTA GGCCAGAACA CTGGGTCCCA ACTGCTAACA GACCGGCCCT CTGACAACAA 600
AAAGAACAGC ACCCAACGCT GGGGAGAAGG AGAGTCTGGG AAGTGATTGC TTCGTGTCAC 660
CCACTGCAAA CCCTCCAGGC AGCTGGCCTT CCCGCCCAAC CTTACCCAAG ACCAAAGGTG 720
AAGCCACCCC TCATCCCAAG CCCGCAGCCA CAGTCTCCCT TCCCACAATT AAATCACAAA 780
AGGTACTAGG CCACGTTCTC ACCAAAACTC AGGTCCCTCA AACCCCAGTG CTCAAAGCCT 840
GAAAACACAG CTCCTGGCTC ACCTCTCTCC AGCAGCCCGA CTCTGCGATC GGCCTGTCTT 900
GCCTGCCAAC ATTTCCAGCT CTGCTAAAAC TGTTTATTGT ACTTGCAGCT GCTATGGAGT 960
CCTGTACCTC GCTTCAGCCT TCTTTGGTTA TTGGCGCCTG TTCTTCCCTC GCTGACACAA 1020
ATCCAGACCC CAAAACATGA GATCTGCCTC GGTCCTGAGT CTTGAAGAGC CCAGCTCCCT 1080
GCCCTTCCGC CCTGATTCAA ACTCTGCCCT CTGCCGCTTT TCCGAACTTT TCCTGACACA 1140
CCAAGAGAAG TCCACTTAGA GCTTTCGTTT TTAGAAAAGA AAACGAAGGT GGGGGCAGGG 1200
AGGAAGGAGC CACATCACTT ACTTCCAGTC CAGGGACGCC CAGGTTTGAA GAGAAGGAAA 1260
CGGTTATAAT CCAATAGGTT CCCCCAACCC AGAAGACTTT CTCGGGAACC ACTTCTTTTT 1320
CCACTTTGCC GGTGAAGGAG CCCCGTGGTA GGCATACATC CACAGGCTGA TGCAAGATGC 1380
CTTTGAGAGA GACCTCACAT TCTGAGGATT CCTGGGCCTG CGCCAAGGAT CCCAGCATCC 1440
AATATATTGC ACATTTGCTT TCAATTAGGA AGGGGGTTGG GGAGGGAAGA AGGCAAGTCA 1500
CCAATCAGAG CTGTTTGCAG TTTGGAGACT ATTTCTTTTG ACCCAAGGGA CCACGAGCAA 1560
AGCTATAATT TACAGCAAAA CCCATTCATA GAAGAAAAAT ATGTATAACC ATAGGAGGAC 1620
TTAAAGCTGC AGCTCCCCTT TGCCTTCTTG CCACCATGCC TCTCGGTGCC TTTCTCCTGC 1680
ATCTGAGACT CGAGTCCCAT CATGGGGTAC TCCCCCCACC TCATTTTTCT TACTCGAGCT 1740
GAAGCTATAA GCACAACGTC AGGTTTGGAG TCTCTTGCGA TTCTCATTTC CTGGACAGTT 1800
GAGTCACACA CATGGAGCTG ATCTTTCGTA TTTTGGCCAT GAGAGCTGAG CGCTGAGCCC 1860
TCCTCCAGAA AGTTTGTTTT ACTCTCTTCC CCTCACTGCC AGAGAGAGAG AGAGAGAGAG 1920
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGGAAG 1980
AAAAGGAAGA AGAACCTAGA TGCTTCTAGT GTCCAGAATT TCTACTTTTT TTAGATTCAG 2040