EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM133-01843

Organism

Mus musculus

Tissue/cell

Placenta

Coordinate

chr19:53874250-53875640

Target genes

Number: 4
Name	Ensembl ID

Dusp5	ENSMUSG00000034765
Smc3	ENSMUSG00000024974
Gm16298	ENSMUSG00000089807
Pdcd4	ENSMUSG00000024975

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EGR1	MA0162.3	chr19:53875009-53875023	TGTGCGTGGGCGTG	-	7.14
EGR2	MA0472.2	chr19:53875011-53875022	TGCGTGGGCGT	-	6.62
EGR3	MA0732.1	chr19:53875009-53875024	TGTGCGTGGGCGTGG	-	7.64
EGR4	MA0733.1	chr19:53875008-53875024	TTGTGCGTGGGCGTGG	-	6.9
Foxd3	MA0041.1	chr19:53874816-53874828	GTTTGTTTGTTT	+	6.32
SOX10	MA0442.2	chr19:53874251-53874262	AAAACAAAGAA	+	6.62

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_05105	chr19:53873998-53878107	E14.5_Heart
mSE_06730	chr19:53874078-53877628	Heart

Enhancer Sequence

CAAAACAAAG AAAGCCTTAA AAAAAAGAAA ATGATAGGGT ATGGGAGAAA GGAAGAGTGA 60
GTATGTTATT CTTAGAGGCT ACATTGGCCA AAATTGCCCC AGACTTGCAG GCTGGTTCAA 120
CACAGCCTTG CAGATACAAG CAATCCCGAG ACAGTTATGG ATGTGTAGGA GACTGTACCC 180
TGTCTGTCAT GTCACCATGT CACATGGCTG GGCCCCCTGG AAGCCTGTCT TGTGGGTCGC 240
TGGGGAACGC ATACTGCTTT CTCTGCACGC ATGGATTTAT CATTTCCCTC ATGCACGTGC 300
TGAGTTCCAC TCCTGAGAGG AAAGGCAGTC CCACCCCTGT CAGTTAGAAA ACCACCAGGC 360
CCTCTTCGTG AGACTTGCAC GCTGTCTGAT AAGAGCAGTG CAGAGCACAG GAGACTAAAG 420
GTCACATAGG GAAGTTGGGC CGAAAATAAA GCGCTAGACG CTCCCTTTAG TGACCGTGGG 480
CAGTTATGCA ACTAAAAGTC CTTTATTCTG TGGATGACCT CAGGTGGCTC ACCATGTCTT 540
TCCTGGTCTT GTGCTTTTCG TTTTCTGTTT GTTTGTTTTG AGACAAAGTC TCACTTACAT 600
AGCCGGGATT GTCCTCAAAC TCTCAATCCT CCTGCCTCAG CCTCCTGAGT ACTGGGTGGA 660
GAAGTGCACA CCACTGTCTG ACCTATATAG TCTTCTTAGT GTAAACTGGA AATGATCACA 720
TTTGAACTCA CTACCCATAT GGTTCCTCTG GAGACTGATT GTGCGTGGGC GTGGGCGTGG 780
GCGTGTGTGT GTGTGTGTGT GAATGTATGT GCATGCGTGT GCATGTGTGT GTTGCAGCAG 840
TGGGCGACTC CTATTAACCT ACCAAGTGAA AAGCCCAGAA CAAAAGAGAG AACGCAGGAT 900
TATCATCGAT GCTATGAATC ATCTCGGAGA GCTGTCATGG TGATATGAAT CACCCTATGG 960
TAATGTTGTG GCAAAGGCCC AAACACGGGT TAGCAGCAGT GACCCGGTAA TCTTGAAATT 1020
AGTCACAGAG GCCTAGCCAA TGATGATCCA GCAACACCAT TGTTTGTGAA GAGAGTGTGC 1080
AACAGCCCTC CCTGTCTCCA AGAAGGAAGA GACCCCCCCT GCTGAAGGCT GCGTTCCACT 1140
CTCACCCCCG CACCAGCCCT GGGGCTCCAG TCCTGGCTCT GCTCTCTTCA GGAGTTCGAC 1200
TGGGGTTGGA ACAACGAGAC TTTTGTATTT CATCAACTTC CCTGGCTTTT GCTTTCCTCC 1260
CTGTGTTGGA CAGGTGGGTT GTGACCACAA GATGATCTCT GAGACTCCTT GCTTCTCAGA 1320
TCTATGACAT TTAGCTAGAA TTTCGAACTT GCAGCCCGCA CAGGACCTGG ATTGTCAGAG 1380
CTAGCATCTT 1390