EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-28454

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr9:110188710-110190920

Target genes

Number: 11
Name	Ensembl ID

Cdc25a	ENSMUSG00000032477
Mtap4	ENSMUSG00000032479
Gm10615	ENSMUSG00000074056
Dhx30	ENSMUSG00000032480
Smarcc1	ENSMUSG00000032481
Cspg5	ENSMUSG00000032482
2610002I17Rik	ENSMUSG00000054836
Scap	ENSMUSG00000032485
Ptpn23	ENSMUSG00000036057
Klhl18	ENSMUSG00000054792
Setd2	ENSMUSG00000044791

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Crx	MA0467.1	chr9:110190120-110190131	AAGAGGATTAG	+	6.62
Foxd3	MA0041.1	chr9:110188712-110188724	AAACAAACAAAC	-	6.32
IRF1	MA0050.2	chr9:110189083-110189104	TCTTTCTTTCTTTTTTCTTTT	+	6.11
IRF1	MA0050.2	chr9:110190750-110190771	ATTTGCTTCCACTTTTTTTTT	+	6.74
Klf1	MA0493.1	chr9:110189837-110189848	TGGGTGTGGCT	-	6.14
Nkx2-5(var.2)	MA0503.1	chr9:110190511-110190522	CTTGAGTGCCT	-	6.14

Enhancer Sequence

ACAAACAAAC AAACTGAAGA TGCAGTCCCA GCCTTGGCTT AGGCCTTGGC CTGTGGTTGG 60
GAGAGTCTAA GACCTTTGGC TACATAACCA TGAACTGTTC CCAAGGTTGG TGGCATTTCT 120
GTGCCATTTG AGTACTGGAT GGGTGTGGTA TGAAGACTTG GACCATGTAT TCACAGTAAC 180
CTGTGGCTCC CCATGGCCTC AGGACTGAAA AACATGTTTG ATTTTTTTTT TTTTTTTTGA 240
AACAGAGTCT CACATAGCCT ACCTAGGCTG ATCTCAGACT TGCATGTAGT TAAGGACGAT 300
TCTGAACTAT TGACTCTGCT GTCCCCTTCC TCTGGAGTGC TACAATTCTA AGTGAGTGCC 360
TCGTATTTAT CTTTCTTTCT TTCTTTTTTC TTTTCTTTTT TTTTTTTTTT CTTTTTGGTT 420
TTTTGAGACA GGGTTTCTCT GTGTAGCCCT GCCTGTCTTG GAACTCACTT TGGCTGTCCT 480
GGAACTCACT TTGTAGACCA GGTTGGCCTC GAACTCAGAA ATCCACCTGC TTCTGCCTCC 540
CAAGTGCTGG GATTAAAGGT GTGTGCCACC ATGCCCCACT TATCTTTCTT TATTTTCCTT 600
TTAATTCATT GACTTTAAAA AAAATCTTTT TTCTTAAATT ACTAACTCCT CCCTCACTAA 660
ATACATTGGC CCCAGGCATC CTGAAGCCCT GACCCCTGGT GACTTATACT TCATTTCAGA 720
CGTGTGGGCC TTCGGTGCTT CACACACACT TCACAGTTTC CATGCCCCAT TGCCAGCTGC 780
TCCCCGAAGG GCCTCAGGAT ACTACATCCC TCTCACCCCC ACCCCTCTCC ACTCCCCTGT 840
CTCTCCTGCC TACCTATCAA CACCCTGTAA CTCGACTTCC TAGTCTGGCA GAGGAGTGAG 900
TCTCTTTGTG ACCACAATGT GTTATTTCTT CATGCTACAG GGATGTCTGT CCCTCTGATG 960
GTACCTGCCA GCCTCAGTCA TAAGCTGGGT TTTATCTGAG TTTCCTAAAG GACTCAATGA 1020
GACAAGAGAG ACCCTGTGAA CACCCAATCT AACTGAACAT CCTTTGTTGC TTGAAGAAAA 1080
ATCCAAGACT CCAGGAGAGG GAGGCAGAAC CCTTGGCCAG GATACACTGG GTGTGGCTGG 1140
GGCTCTCAAG TATCCTATGA CTCTCTCTCT CTCTTGGGAC AAGATGAGTC CTCAGACCCA 1200
CCTGTGCCAT TCAAGCCCTG ATTCAGAGCT CGCATTCTGA CCACTTCAGC ATCAGGGACA 1260
ATCATACTTG GTTGTTGGGC AGCTTGGCAG GGGCAGCAGC CCTCTGTGAT GAGATGCAGT 1320
TGGCACCAGA GTGTGGGACA AAGGACTAGC TTGGCAGAGA ATCAGACAGT TCCTTCTGCC 1380
ACCAGCTCCG GCTTTCCGCT GGGGATACGT AAGAGGATTA GGGCTCAGAA CTCTGGACAA 1440
GGGGCTTTTA TTCATGGGAC TAAATTTTCA TTGGCTTGCA AAACCCAAGT GAATGGGGAG 1500
GCTCTGACCT GTGGTCTCTT TGGGGGAGCA CGGGGAGCCC TGCCCCCATG GGATGGATAA 1560
AGGCATCTAC CCCTACCACA TCTGTCTAAG GTCAAAGCTT CAGGTCCCAG GGGGGCAACC 1620
TCTCCTTGCC ATAAGACAGC CATTTACACT CCGGCAGGAG ATTTCCCGAG TCAACAGTGG 1680
CTTATGAGGG AATCAAAGTC CTGAAATGTC AGGGCAGATG GAGGCATGTT GCCACCGTTC 1740
CATCTTCTGT ACGTTTGTCC TGGAAAAATG AGTTACAGAA AGGAATTGGA AAGCCCCTCT 1800
GCTTGAGTGC CTGAGCAGGT ACCAGAATGA GGAAGGGAAG GAACTAGGGC TGCCTGGAGC 1860
GGTGCTGGGG CTGCTCTGTG TCCACGGTGG GTGCTCTACC AACCCTAGCA GCCCTGGTTA 1920
CTGGAGCGAT ACAGCATGTG CTTATGGGTA ATCTTTCTCT CGGCGTCATG GCTTTGAGTG 1980
TTGGATGCAC CATTTCTTGC CGCGTGTCCA CAGTTCTAGT GAGCAACTGA CAAACATTTG 2040
ATTTGCTTCC ACTTTTTTTT TTTCCGAGAC AAGGTTTTTC TGTGTAGCCC TGGCTGTCCT 2100
GGAACTCACT CTGTAGGCCA GGCTGGCCTC GAACTCAGAA ATCTGCCTGC CTCTGCCTCC 2160
CAAGTGCTGG GATTAAAGGC GTGTGCCACC ACGCCCGGCT TTTTCTTTTA 2210