EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-23896

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr7:29354980-29356220

Target genes

Number: 18
Name	Ensembl ID

Eid2	ENSMUSG00000046058
Timm50	ENSMUSG00000003438
Rps16	ENSMUSG00000037563
SNORA40	ENSMUSG00000077711
Zfp36	ENSMUSG00000044786
Med29	ENSMUSG00000003444
Paf1	ENSMUSG00000003437
Samd4b	ENSMUSG00000037513
Lrfn1	ENSMUSG00000030600
Pak4	ENSMUSG00000030602
Fbxo27	ENSMUSG00000037463
Fbxo17	ENSMUSG00000030598
Mrps12	ENSMUSG00000045948
Sars2	ENSMUSG00000070699
Sirt2	ENSMUSG00000015149
Hnrnpl	ENSMUSG00000015165
Ech1	ENSMUSG00000053898
Eif3k	ENSMUSG00000053565

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

TFCP2	MA0145.3	chr7:29355367-29355377	AAACCGGTTT	+	6.02
TFCP2	MA0145.3	chr7:29355367-29355377	AAACCGGTTT	-	6.02

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_07389	chr7:29354397-29359259	Intestine
mSE_08111	chr7:29354346-29359152	Kidney
mSE_08998	chr7:29353407-29364225	Lung

Enhancer Sequence

TATGACCCAC TAGGGTCTAC CTGGGGCAGA CGGTCCCTAG GTAGTGACAG TGTACACTGG 60
TAGGGACTGG GCCCACAAAG TGCTACCAAC CACGGAAGGA TGGCAGGTGT GCTAAGGGAG 120
GCTTCCTATA GGAGGCTTCA GGAGTGAAGG CCCAAAGGAC CAAAGGGTGT CAGAGGACTT 180
TCATCTTTGT CCCACCTGGC TCTTCAGTAC CTGGCAGGGT GGTGGGCAGA CACAGAACCA 240
GCACCCAGCC CCAGTGAGAC TCTGCTGGGG AAGTGGCTAC AGACAAGTGT CCAGGGGGCA 300
GCTCTCTTCT TCTCCAGGCA TGGCTCTCTT TCTTGGGAGT CACTGGCTCA GCCTACAAGA 360
AGGACATTAA TGGGCAGCCA GCCAGGGAAA CCGGTTTGGC AGCCAAGCCA AGAGAGAGGC 420
AGGTGGGGAC GCAGCAGCCA ACCTGTCTCA ACTGGTCCCA AGGGGCCAGC AGGTGGCCAG 480
CCCCGGGCCT GGACAGGACT TTCCCAGCTG GTTTAGTTTC TTTGCTTGAT CCAAGTCCAG 540
GGGTTGTGGC TGAGGGTTGG GACAGCTAGG GCAGAATGGG CACCTCTGGC TTCCAGCCTT 600
CTCTGCCTCA GAACCAGCAC TGCAACATGC TGCCCTCCTC CCAGCCTTTC CTGTCCAGCC 660
TGTCCCAGCA CCCCGACCTC TGCACCAGGG CTACCCAGCC CTCCTTGGCG CTACGCCTGT 720
CTCTACAACT CTAACAGTGC CACACCTTGT GCTGCCTGGC ACAGCGTGGA GCCTGTGCTG 780
CGACCTGCGG CTCCCTGTCC TCCGTGTCTA GCTTGCTATC CACCCTGAAC TCTTGGCTCT 840
ACTCTCAGTT CCCACCTCCC ACACCGAGGG AGCCCCAAAG CAGCTCCCAG ATTTGGCAGT 900
ATAGGGGGTG GTAGTGCATG TGACCACTCA CTAAGCATAG GGAAGCGCTC AGAATGGAAA 960
AGGTGGGAGA GCTTTCAGCA GTGCCTTTCC ATGCTCCCCC ACACAGACCC CTACCCCCAC 1020
CCATAAGCCC CAAGCCACCT TGCATACTGC AGCCACTTGT GACCCTGCAG GAGAAGGGGC 1080
GGAAGGGCAC ACCTCCGGAT ATTTGCCTGG GCCACCCCTT TCCTCTGGGC AGCATATGGA 1140
GGGAAGGACA AACAGAGGAA CTGGTGTTTA TAATGACCTG GTGTAGGCCC CACCCAGGCC 1200
CTTTTAGGCA TCTCGTGGCT GGGATGGGTC TCCCAGGCCA 1240