EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-23348

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr6:125106740-125108360

Target genes

Number: 28
Name	Ensembl ID

Emg1	ENSMUSG00000004268
Phb2	ENSMUSG00000004264
Grcc10	ENSMUSG00000072772
Atn1	ENSMUSG00000004263
Tpi1	ENSMUSG00000023456
Usp5	ENSMUSG00000038429
Cdca3	ENSMUSG00000023505
Leprel2	ENSMUSG00000023191
A230083G16Rik	ENSMUSG00000055818
Ptms	ENSMUSG00000030122
Mlf2	ENSMUSG00000030120
U6	ENSMUSG00000065765
Cops7a	ENSMUSG00000030127
C530028O21Rik	ENSMUSG00000030329
Zfp384	ENSMUSG00000038346
Ing4	ENSMUSG00000030330
Acrbp	ENSMUSG00000072770
Lpar5	ENSMUSG00000067714
Chd4	ENSMUSG00000063870
SCARNA11	ENSMUSG00000088208
Nop2	ENSMUSG00000038279
Iffo1	ENSMUSG00000038271
Gapdh	ENSMUSG00000057666
Scarna10	ENSMUSG00000089617
Ncapd2	ENSMUSG00000038252
Mrpl51	ENSMUSG00000030335
Mir3098	ENSMUSG00000093157
Vamp1	ENSMUSG00000030337

TF binding sites/motifs

Number: 7

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr6:125108303-125108315	AAACAAACAAAC	-	6.32
Myod1	MA0499.1	chr6:125106966-125106979	GGTGACAGCTGCT	-	6.41
Myod1	MA0499.1	chr6:125107028-125107041	GGTGACAGCTGCT	-	6.41
Myod1	MA0499.1	chr6:125107097-125107110	GGTGACAGCTGCT	-	6.41
Myod1	MA0499.1	chr6:125107150-125107163	GGTGACAGCTGCT	-	6.41
TFAP2A(var.2)	MA0810.1	chr6:125107521-125107533	TGCCCTCAGGCA	+	6.32
ZNF263	MA0528.1	chr6:125106921-125106942	GGAGGTGGGGTAGGGGAGGGA	+	6.36

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_01046	chr6:125097229-125107603	Myotubes
mSE_11431	chr6:125107014-125108351	Placenta

Enhancer Sequence

CTTCATCGCT CCTATCTACC TCTACCCCTG CCTCTCCCAC ACTGAGTCTG AAATTTGGGG 60
GTGATTTGTT GAAGGCATCT TCTAGAATGT GCATCTTCCC CTTCAGTGTG TAAATCAGGG 120
TGACATATGA CACTTAGAGA CATGGCTGGT AGTACTGCCT TATGCTTTGA GAGACTATAA 180
TGGAGGTGGG GTAGGGGAGG GAGTGAGGGG TATGCTTGTA TTTATGGGTG ACAGCTGCTC 240
TCGACCTGTA ATAGTGTGTG TGTGTGTGTG TGTGTGTTGG TATGAATGGG TGACAGCTGC 300
TCTCTGACCT GTAATAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTGGT ATGTATGGGT 360
GACAGCTGCT CTCTGACCTG TAATAGTGTG TGTGTGTGTT GGTATGTATG GGTGACAGCT 420
GCTCTCTGAC CTGTAATAGT GTGTGTGTGT GTGCGTGTTG ATGTACATGG GTGGCAGCTG 480
ATCTCTGACC TGGAATGCTG TGTGCATTTG TCTGTGGGGG GTGGCAGCTG AGCTCTGATC 540
CTCAGTGTCA TGTTTTTCTC ACAAATGGTG CAGTCTGCTG TGGGAACAAG CATGCCTTTC 600
AAGCCATCTC CTCTGTGGCT TACCACCCAG CTGTTCAGCA GATGACCCAA AATGCCAGTG 660
TCCTGGCTGT CTCCTTTGTC TGCTCCTGGG GCCCACTCCC ACCCGGTCCA GTTCACATTT 720
GTTTCGGGTG ACTTCCCACA GCTGATCCAC ATGCTTCAAG GCCACTCGGC CTCCTTGTCT 780
TTGCCCTCAG GCAGCCAAGC AAATCTCCCC ACCGCAGTCT GATTCTCCCT ATCTGGCCCC 840
TGGCCTTTGT ATCACAAACA AAGAGAGGCC GCAGTTTGTC TCTGGCCTAG ATACTTTTCC 900
GCCTCAGCCT ACTTTTTTTG CTGCCTTCAA ACCTGGCTGC AGAGTCAGCT CTGGAAGGGA 960
GACTTTTCTT GATACAGAGA CTCCCCCCCC CCATTTCTTT TGTTGGGGAT TTACCCTGTA 1020
ATCACTCAGG AGGAAGGTCT CTCTCTTATG TGGGCGAGCA GGATATAAGG GAGAAGATGA 1080
TGTGGAATGA AATGCTATAA ACAGAAGCAG CCAGGTTCCC TCCATTGCAG CGAGGCTTTG 1140
GAATATTTCA CAGTGAATTA GCTTCAGTTG AGGGGAGGCT CAGTGGCAAA GATGGACAGA 1200
TGAGTGGCCC TGTCTGTCCT TAAAGCAGTG GTGCTCAGCC TTCCAGACGC TGTGACCCTT 1260
AACACAGTGC TTCACGCTGT GGTGGCCCCA GGCATAAACT ATTTCATTGC TGCTTCATAA 1320
CTAATTTTGC TACTGTTACG AATTATAACA TAAATACAGA CATGCAGAGT GTCTGATAGT 1380
CAACCCCCAA GGGGATTGAG ACTCACAGGT TAAGAACTGC TGCCTTGCCG GGAGTGGTGG 1440
TGCACACCTT TAATCCCAAC ACTCGGGAGG CAGAGGCAGG CGCATTTCTG AGTTCCAGGC 1500
CAGCCTGGTC TATAGAGTGA GTTCCAGGAC AGCCAGGGCT ACATGGAGAG ACCCTGTTTC 1560
GAAAAACAAA CAAACAAAAT ACTAAATTTT TTTTTTTTTT TTTAAGATTT ATTTATTTAT 1620