EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-19768

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr4:129731710-129732380

Target genes

Number: 18
Name	Ensembl ID

Eif3i	ENSMUSG00000028798
2510006D16Rik	ENSMUSG00000028797
Dcdc2b	ENSMUSG00000078552
Iqcc	ENSMUSG00000040795
Gm12965	ENSMUSG00000086797
Txlna	ENSMUSG00000053841
Kpna6	ENSMUSG00000003731
Khdrbs1	ENSMUSG00000028790
Ptp4a2	ENSMUSG00000028788
Gm10571	ENSMUSG00000073753
Gm12966	ENSMUSG00000070729
Spocd1	ENSMUSG00000028784
1700003M07Rik	ENSMUSG00000085389
Bai2	ENSMUSG00000028782
Gm12963	ENSMUSG00000085517
Col16a1	ENSMUSG00000040690
Pef1	ENSMUSG00000028779
Nkain1	ENSMUSG00000078532

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RUNX3	MA0684.1	chr4:129731962-129731972	TTTGCGGTTT	-	6.02
ZNF740	MA0753.2	chr4:129732215-129732228	ATGGGGGGGGGGG	-	6.07

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_05952

chr4:129732255-129734031

E14.5_Limb

Enhancer Sequence

ACAGCAAGGT GGGTGAGCAG GGGAGACTGT CCCACCCCTC ACTTGGCTGA GGCTTGCCAC 60
CAGGTTCAGC TGACCATGTG CCTAGGCTGG GGAAGTCCCC CAAATGTGGA CTCAATGTAG 120
GTCTTACCTT ACGGAACTCA GGGAGGCAGA GAGAGAACCC GTGGAACAAC CCTGTCTGCT 180
CCTCGTTGGC ACTGACCGTT ATGCTGCCCT ATTTCCGACT TGCTAATGCA TCCTGTGGAG 240
GGCGGGACCC CATTTGCGGT TTCTCCTGTA CAGGGATATC TGGGCTCAGA GACCAGGCTG 300
CCCTGGGCTT GCTCACTTTC CTAGCACCAT GGCCAGCCAC CCTGTCCACT CTCAGGTTCT 360
TTGGAGATGG CAGGGGAACT TCTTCCTTCC CTTAGCCCCA CCCTCAGGCT GGGCAGTGTC 420
CCTGCCTACC CAGGCAGCAT GCCCAGCCTT TGGCTGCAGA AACACAAGAT CCCATTCATT 480
CAATGTCTGT TTTCTACAAC ATCACATGGG GGGGGGGGTG CCCGTGGGGG CAGCCTCAGG 540
GGCCTGAGCA AACCCTTGAT GATCTGGGAG GTGTCAGATG CCAAGTTGAA AGGGGTGCCT 600
GGCATCCATG TGCTCTGCCT GGATGCCCCA TTCCAGCACA GACCCCAGAA CCATCCCTCT 660
GTCTGTCCAG 670