EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-18062

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr3:108115740-108117760

Target genes

Number: 29
Name	Ensembl ID

Fam40a	ENSMUSG00000014601
Ahcyl1	ENSMUSG00000027893
Gstm5	ENSMUSG00000004032
Gstm7	ENSMUSG00000004035
Gstm4	ENSMUSG00000027890
Ampd2	ENSMUSG00000027889
Gnai3	ENSMUSG00000000001
Gpr61	ENSMUSG00000046793
Amigo1	ENSMUSG00000050947
Cyb561d1	ENSMUSG00000048796
Atxn7l2	ENSMUSG00000048997
Sypl2	ENSMUSG00000027887
Gm12501	ENSMUSG00000083462
Psma5	ENSMUSG00000068749
1700010K24Rik	ENSMUSG00000085102
Sort1	ENSMUSG00000068747
Gm12523	ENSMUSG00000084863
Gm12525	ENSMUSG00000078601
Gm12522	ENSMUSG00000074281
Psrc1	ENSMUSG00000068744
Celsr2	ENSMUSG00000068740
Sars	ENSMUSG00000068739
5330417C22Rik	ENSMUSG00000040412
Tmem167b	ENSMUSG00000068732
Taf13	ENSMUSG00000048100
Wdr47	ENSMUSG00000040389
Gm12517	ENSMUSG00000081499
Clcc1	ENSMUSG00000027884
Gpsm2	ENSMUSG00000027883

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr3:108117710-108117730	ACCCAAAACAACAACAACAA	+	6.72
SCRT1	MA0743.1	chr3:108117150-108117165	GTGCACCTGTTGCTT	-	6.17
SCRT2	MA0744.1	chr3:108117152-108117165	GCACCTGTTGCTT	-	6.82
SNAI2	MA0745.2	chr3:108117151-108117161	TGCACCTGTT	-	6.02
SOX10	MA0442.2	chr3:108117686-108117697	AAAACAAAGCA	+	6.02
TBP	MA0108.2	chr3:108115812-108115827	CTATAAAAGGGGCTG	+	6.22

Enhancer Sequence

CTCCTAAGTG TTAGCATTTT TATCTAGGCT CCGCCCACAG TTACCTGGCA ACAGCCAGGT 60
GTGCCTGACT CACTATAAAA GGGGCTGCTC CATTCCCCTC TCTCTTGCTC TAGCTCTGTC 120
CTCTCTTCCC GCTCTCCCTC TCTCCCCATT CCCCACCACC ACCACCACAT GCTCATGGCT 180
GGCCTCTACT CCTCTGCTCT CATTCTCTGC CTTTCTCTTT CTCTACTGGT CTCTCAGATC 240
CCCTCCCTTG TGCTGAATAA ACTATTCTAT ACAGGGGGAA GGGATGCCTC AGCATGGGCC 300
GGCAGAGGCA CCCCTTTTTC CCCCCACACC TTACCGCACC TACACCAAAC ATATTCCTTC 360
TCTCTTTATC TTTATAAAAC ACAATACAAA GACTTTCTAT TAGTTTTAAA GGAGGATGAT 420
AGCAGTGCTC ACCTCAGGGT CACCATGAGG TGAGGACTCT GCAATGCATG GCATGGAGTG 480
ACAGAGAGAG CTTGGTCTAG AGTAGGCAGC TGCCAGCATT GCTGCCCTAG TTGTCAAAGT 540
GACTGGGAAG TCTTCCAGGG TGGATGGTAT AAAGCGATGG CCCCCACATT CTTCCACTTC 600
TGTTAATGCA GAAGCGGCTG CACAAGCTCT TGTTCCCTCA GTAGCTGCTA GTGGGTCTTG 660
TACACTCGCT ATTCTCATAT TGTCAGACTG ACACAGTTTA CTTAATTGTT ACTCTTTTGG 720
ACAGCTAGTT AAAAGGTGGC CAGTTTTTCA CTGAAACTAA TGGTTCTAGG ATGCACCTTG 780
TCACAGGCTG CTCCTTTCCA GTTCGTTCTT CAGTGGCAAA TGGAAACCTG ATTATTGATG 840
ACTCTATGTT TTGAAGGCTG TTTATTAAGC TCCCCCTTTC TATGCTGTCT TGTCTTCCAT 900
ACATAACGCT TCAAGCCAGT TTTCTCTTGT GCCTAATAAT TTTTTGTGTG TGTTTGCTTT 960
GTTTACTACA AAGATCTTGC CCCGAGTGGC TGCAGTTGGA GCTAATGAGT TCCGGAGTCT 1020
GCCCATGGCG ATGAACCCCA TCCTTTTCAG TAATGTGCTT AGAGTCATAG GCACTGTTTA 1080
AATACTGACC ACAGGCCGAC TCAAGCCTTT CGCCTGATTT TTGAGAGAAA ACCCGCTTTG 1140
CTAACACACC CTTTACTAGA GAGCTGCCTT GCTTGTTTGC GGAATGGTGT CCTGTTAACA 1200
AGGCTCTTTT TCTTCTTGGC TCTGTGATAT TGCTGCCATA GTCTTTACCA GTCATTCTGA 1260
ATATTCATTA TCTCTCCTCG TTGTGAACTG AGATAGGATT CTGTCTCCTG TTGCAGAGTT 1320
TAGGAGGAAA CTGTAAATAC GCCCTGCTGG CTCTTCAGCT GAGCTGGCCT GCCCTGGCCT 1380
GAAATGACTT TGTTGAGCTC GCCAGCCAAA GTGCACCTGT TGCTTCAGAA ATGGAAAAGG 1440
GAGGGCCGTT TACTCGCAGT GGGTCCTGGG TAGTTTTCAG TTGCCCAATC CCGTAATAAA 1500
AGCTGGCAGA GTCTGCTCTA ACAACTCTTC TGTTTTTCAC AGCTTTGATG ACTATAGTTT 1560
ATTGATTTGC CTTTGTTCAG GAAAGCTTCA TTTGGAATGC AAATTACAGG ATAGGTAAAT 1620
GTGTGCCTCC TGCTGGGTAG AGCTAGGCAT GAAGGCTCAC CAGAATACCA GGAAATTGTC 1680
TCTGCTGCCT CCATAGGGAA AGGGTACCAG GAAGGAAATT ACTGAAGGAC TAGGCACCGC 1740
TTGTCATAGG TGACAAGATC AGAATTCTCT CTCCAGTCTG TGCGCCAGCC TTTTAAAACA 1800
TTTGTGTTAA TTCTTTGAGA GTTTCATACA CTATTTTGAT TATATTCATT CCCCTCCCCC 1860
AGTTCCTTCC AGATCCCCAT TTCATACCCA CCCAACTTTG TGCCCTCACT AAAACAAAAC 1920
AAAACAAAAC AAAACAAGAA AACCCAAAAA CAAAGCAACA ACAACAAAAA ACCCAAAACA 1980
ACAACAACAA AACCACCTCG CCTTATTAGT TCTGGGTATG 2020