EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-17665

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr3:88019600-88021450

Target genes

Number: 27
Name	Ensembl ID

Prcc	ENSMUSG00000004895
Hdgf	ENSMUSG00000004897
Mrpl24	ENSMUSG00000019710
Isg20l2	ENSMUSG00000048039
Crabp2	ENSMUSG00000004885
Nes	ENSMUSG00000004891
Gpatch4	ENSMUSG00000028069
Apoa1bp	ENSMUSG00000028070
Mef2d	ENSMUSG00000001419
1700113A16Rik	ENSMUSG00000086082
AW047730	ENSMUSG00000091886
Gm3764	ENSMUSG00000091070
Mir3093	ENSMUSG00000092988
1700021C14Rik	ENSMUSG00000010538
Cct3	ENSMUSG00000001416
0610031J06Rik	ENSMUSG00000001418
Smg5	ENSMUSG00000001415
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Mex3a	ENSMUSG00000074480
Mir1905	ENSMUSG00000084728
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Ssr2	ENSMUSG00000041355
2810403A07Rik	ENSMUSG00000028060
SNORA42	ENSMUSG00000084433

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr3:88020252-88020273	CTTTGCTTTCACTTTGGCCTT	+	6.37
RORA(var.2)	MA0072.1	chr3:88020538-88020552	CTGACCTAAATATT	-	6.08

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

mSE_03757	chr3:88017104-88021550	Cerebellum
mSE_04018	chr3:88018295-88021608	Cortex
mSE_04384	chr3:88016859-88031229	E14.5_Brain
mSE_10788	chr3:88017655-88021026	Olfactory_bulb

Enhancer Sequence

TAACCCCATA CACTGCGCAG AGGGCCTGGA ACGCTGGTAG TGGCCGAGCT GCAGGAGGGA 60
GAGCCGTGCC AGGCGTGCCT GGAGGCTGGA GGGCTGGGGG GAGGGGGACT CGTCGCCTTC 120
AAAGGTTGCT CAGCCCGAGC CACCTCGCGA TCCCCACCCG CAACCTGCTC ACCTGGGAAG 180
AAAGCAAGAA GCCGCTCTGG GGTCGCCTCT GGAGGCCTGG TCAAAATGGA GCAGTCTGGG 240
CCTCAGTCCG GAGAAGCCGC TCCCGGGAGA GACAGAGCCC TTGGCTGAAG GGTTGGGGGG 300
AAAGTGCAAG CATCCCTCTC CCGGTCTCGA CGCATCCCGG GAGCGGGTGG CTGGTGTGAG 360
CAGCTTCCCT CTGGCTCTTC GAAGCGACTG GTGGAGTTCG AGGTTCGTAG GATGTCTCTA 420
GAAAGCTGGT TTTTGCTTTG GTGGTTTCCC TGAAGCCCTT CAGCTTTACT GGGAGTCAAG 480
ATTGCCCAGG TGGGAACAGG TCTAGGAGCG GGGAAGGCTT AAAAACCAAC ACACACATCG 540
AACTTATTAG GGAGAATGGC GATGCAGAAA CAAAGTAACC ACAAGGGCAA GGGCCAGAGT 600
GGCCAGAGAC CTTTTTACCC CACAGGAATT CTGGGACCCT GGGGCGCAGG TTCTTTGCTT 660
TCACTTTGGC CTTCAGGACC AGAGCTAAGT CTAACTGAAC TCTCTCTGGC TGCTTTGTCA 720
TTAGTGGCTA AAGGTGTAGA GTTGGGGTGG GGGGCTTTAG AGCATCCCAC CTTTCGGTCC 780
TAACCTCACT CTTGGAAATC GTGTCCCAAA GGAACAAATG GCCTCAAGGA GCTCTGTGGA 840
GCTCAAACAC AAAGGAATGT GTAGCTGTGC TGCCCAGAGA ACGCAAAGAA TTAGAGAGAT 900
TAATTTGGGC TCCTGTAAAA AGAATCTATT TATCTTGCCT GACCTAAATA TTTTAGTGAA 960
AGAGGGTTTC TACAGCTGAG AAGATGGTCT AACAAACATG GCCAGAGCTA GGAATCCCCT 1020
CTGCTCTCAT GGCCCTCAGC CGAACTTGAC CAGCTGGCAC TTGGAGACCT GGGCTGTACC 1080
GACTAATAAG AGGCAGAAAA CTGGGCAAAA TGTCATCACC CAGACTCCGC TGGTTCTTAT 1140
AAATTTAAAA TTTCCTCCCG GGACCTGATT TTACAGTTAG AAGATAATGA TTCAATTTTG 1200
TATTACATGG GGGGAAATAT TAGAGAATCC AAATTCAAAT TCTGGGACTT CAGGGAATCT 1260
ATTGCCTGTG TGTGTCTTCT TTAGCAGTTA GGGGAGGGAG AGTCGAGTGG CCTCTTAAAT 1320
TCCAGAAGCT TGGAATTTGT TTTGTTTTGG TAGGGGTGGT GGGGATGAAG CTTAAGTCAA 1380
GGAGAAAAGA GGCTGGGTCT AGGCTGGAAC TAATGGTCTG GCCACAGCCT GTTTTCTTTT 1440
TCCGCTGCTT GAGAGATGCC ATGTGATCCC ATGTTACACA GGCACAAGTG AGCAGCTGAC 1500
ATTACTCACT GGCTTGACAC TCAAAGCTCC TTCCATTTAC TCTGTCTTGG AGAAAGTGAC 1560
ACTCCCCACC CCAAGGGAGC CAACTGGGAA AGTAGAAAGA AGGGAAGCCT CTCTGTTATT 1620
GGGAATTTGC ATGGGCAGAG GAGGGGCATC AATAAAATAA GCTTCCTTAT CATTACCATC 1680
TTTAATGTTT CCTGTATAGT GTCTTCACTG TAAATTCCAG GACAGCCAGG GCTACACAGC 1740
CCTCTATCAT AGCACAGGCC TATAATCTGA GCAGTTGCAA AGTAGAGGAC GAAGGATCAA 1800
GAATTCAAAG TCATCCTTGT CTACACAGCA AGTTCTTGGG CATCCTAGAG 1850