EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-14435

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr19:46564380-46565630

Target genes

Number: 19
Name	Ensembl ID

Ldb1	ENSMUSG00000025223
Nolc1	ENSMUSG00000015176
Nfkb2	ENSMUSG00000025225
Psd	ENSMUSG00000037126
Fbxl15	ENSMUSG00000025226
Gm17393	ENSMUSG00000091234
Cuedc2	ENSMUSG00000036748
Tmem180	ENSMUSG00000025227
SNORA32	ENSMUSG00000065204
Actr1a	ENSMUSG00000025228
Sufu	ENSMUSG00000025231
Trim8	ENSMUSG00000025034
Arl3	ENSMUSG00000025035
Sfxn2	ENSMUSG00000025036
D19Wsu162e	ENSMUSG00000047731
2010012O05Rik	ENSMUSG00000062376
As3mt	ENSMUSG00000003559
Cnnm2	ENSMUSG00000064105
Usmg5	ENSMUSG00000071528

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MAFK	MA0496.2	chr19:46565380-46565399	CTCTGCTGACTCAGGAAAT	+	6.53
MAFK	MA0496.2	chr19:46565380-46565399	CTCTGCTGACTCAGGAAAT	-	6.86
RREB1	MA0073.1	chr19:46565249-46565269	AGGGAGTGGGAGGTTGGGGG	-	6.41
ZNF263	MA0528.1	chr19:46565257-46565278	GGAGGTTGGGGGAGGGGAGGG	+	6.63

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_09529	chr19:46562152-46564695	MEF
mSE_10166	chr19:46565315-46565701	Embryonic_stem_cells

Enhancer Sequence

AGTTCCCATA GGGAGGCTCT TAAGCCCTTT ACTTCTCTCC TTTCCTATGA CTCCTCCTAG 60
CTGTCTGGAG GACTTCCCAA GAAGGGAGTT AGTGTCCATC TTCCCCCTAT GACATCTTTC 120
TGAACACTGA AGAATGGTTG GCCTCTGAGC AATGGAGTTG GTCCTTCCTG GACCCTTGGT 180
CCCTACAGTA CCCAGGACAA GAGGAGAGTC TAAAAGCCAG ATTGACAGGT CCAGGGTATC 240
CCAGGCCATC ATTTCCCCTA AACTCACCCT TCTTACCTAA CTTAACTGGG AAAACACGGG 300
AGTCTGTGAA GATCTTGCCC CACCGAGAAA GGGAGGCATC CTAACCCTGT GTCCCTGGGA 360
GACAGTGCCA GGCCAAGATT GTTTAGAAAG ATAAGAGCTT TCTAGAACCC CAAGAGCTTT 420
CTAGAGACTG GATCTCAAGC GGAAACCCCA TTCTTAATGA CTTCGGGAGA GAGATCTGCC 480
ATGTGGTCTT TAAAGACTCC TTAAAAGACC TTAGCCTGGC GGTGGTGGCA CATGCCTTTA 540
ATCCCAGCAC TTGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCGAGGCCA GCCTGGTCTA 600
CAAAGTGAGT TCCAGGACAG CCAGGGCTAT ATAGAGAAAC CCTGTCTCAA AAAAAAAAAA 660
AAAAAAAAGA CCTTAGAAGA CCTCCATGTT ACTGTGGGCA TCTATTCTGG CTCTTCTGGT 720
TCCTTCAGTA GGGCCTCTGC TCCAACACCA GGGGGTAGGG GGAGAGCCCA AGAGATTTGC 780
CAAACTGGCC CAACCCACAA GGGAATGCAA GCTGGAAGTC ACAGCGCAGC CTGCCAGGTT 840
TTGAGGCAGC TGCAGGCATT GAGAGGGAGA GGGAGTGGGA GGTTGGGGGA GGGGAGGGTG 900
TGATGGGATC CCAGCCTGCA GGGGCAGGTC AGGATGTGGT CTGGGAGGAA CGGGCCTTGG 960
GGGCTGGGGG GAGGTGGGGC ACAGTGAACC TGAGCCAGTC CTCTGCTGAC TCAGGAAATC 1020
TGGGAGAGGC TAGTGAGATG TTTCTGCTCA GGAAAGGTGC TCACTGCCAA ATCTGATAAC 1080
CTGAGTTTGA ACACCCCAAA CCTCCATGAC AGGAGAACTG ACACCCTCAA GTAACCCTCT 1140
GCCACATGGG CACTGTGGTA TGTGTGTGCA CGCACACATA TATAGGATTA TTTTTACAGA 1200
GGGCCTGTGT TGAGACAGGG TTTCTCCAGA TAGCTTTGAC AATGCCTCAA 1250