EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-13897

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr19:6505050-6505810

Target genes

Number: 20
Name	Ensembl ID

Mrpl49	ENSMUSG00000007338
Fau	ENSMUSG00000038274
Tm7sf2	ENSMUSG00000024799
Arl2	ENSMUSG00000024944
Ppp2r5b	ENSMUSG00000024777
Atg2a	ENSMUSG00000024773
Mir192	ENSMUSG00000065523
Ehd1	ENSMUSG00000024772
Cdc42bpg	ENSMUSG00000024769
Men1	ENSMUSG00000024947
Map4k2	ENSMUSG00000024948
U7	ENSMUSG00000087828
Sf1	ENSMUSG00000024949
Gm14966	ENSMUSG00000079467
Pygm	ENSMUSG00000032648
Rasgrp2	ENSMUSG00000032946
Nrxn2	ENSMUSG00000033768
Gm14964	ENSMUSG00000052188
Slc22a12	ENSMUSG00000061742
Hmgb1	ENSMUSG00000084221

TF binding sites/motifs

Number: 11

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF2	MA0051.1	chr19:6505513-6505531	CTTTTCCTTTCTCTTTCC	-	6.03
NR2C2	MA0504.1	chr19:6505621-6505636	TGACCTCTGACCTCA	-	7.88
NR2F1	MA0017.2	chr19:6505617-6505630	CCTGTGACCTCTG	-	6.19
NR2F1	MA0017.2	chr19:6505649-6505662	CCTGTGACCTCTG	-	6.19
NR2F1	MA0017.2	chr19:6505681-6505694	CCTGTGACCTCTG	-	6.19
NR2F1	MA0017.2	chr19:6505717-6505730	CCTGTGACCTCTG	-	6.19
NR2F1	MA0017.2	chr19:6505749-6505762	CCTGTGACCTTTG	-	6.44
Nr2f6	MA0677.1	chr19:6505621-6505635	TGACCTCTGACCTC	-	7.42
RXRB	MA0855.1	chr19:6505621-6505635	TGACCTCTGACCTC	-	6.84
RXRG	MA0856.1	chr19:6505621-6505635	TGACCTCTGACCTC	-	6.91
Rxra	MA0512.2	chr19:6505621-6505635	TGACCTCTGACCTC	-	6.88

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_03678	chr19:6504079-6505311	Cerebellum
mSE_04129	chr19:6501507-6505996	Cortex
mSE_10799	chr19:6501917-6505302	Olfactory_bulb

Enhancer Sequence

CACATTGTAA GGACTGGAGC TCAGGGCCCA TCCTGCCATC CTGAGTCCCA ATTCCCTCAG 60
GTCTCAGTGG TGGGGATGCC ATCTCACTAC TGTCCTTCAT GGGGAGAACT CAGGGCCCCA 120
TTCCCTCACT CCTTGAAGTT TTTTGTTCAC TCAGGAGCCA CCCAGTGCTG GCCAGTTGTC 180
TTCCAGTCAC CCAGGGGTCT GAGCTTCCAG GTTATTCTAC TGTAGCTTTC AAAGTGGCTG 240
CTCACTGCTG TCCCTGTCTT CTCCGTCACA CCTACTTGCC CAACAGTGGC CACCTGTGCC 300
TCTTGGTCTT GACTTTGAGC CCTGCCCTGC TTTTGCGTTT TTGTGACCTT CGCCATCCCA 360
GCAGACCCTT GGCCAGGTCT TTTCCACAGG TTCTAGTCAA GTTCATTCCT CACTGATCTC 420
TTGGTTGAGC CTCACATCCC ATTTGTCTAT TGCTGATTTA TCCCTTTTCC TTTCTCTTTC 480
CACCCGGGCA GGGACAATGG TCAAGGGCAC TGGCCATTCC CACCCCACAC CCTTCCCTGT 540
GATCTCTGGT CCTGTCCTAT ACCCTTCCCT GTGACCTCTG ACCTCATTCC ACACCCTACC 600
CTGTGACCTC TGGTCCTATC TTACATCCTT CCCTGTGACC TCTGGTCCTG TCGTATATCA 660
TTCATTCCCT GTGACCTCTG GTCCTGCCCC ACACCCTTCC CTGTGACCTT TGGTCCTGTC 720
TTAGATCCTC CTCTTGGCCA GGTCTTTCCC ACAGACTCTA 760