EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-13801

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr19:4988990-4989640

Target genes

Number: 17
Name	Ensembl ID

Lrfn4	ENSMUSG00000045045
Spnb3	ENSMUSG00000067889
Rbm4b	ENSMUSG00000033760
Zdhhc24	ENSMUSG00000006463
Bbs1	ENSMUSG00000006464
Dpp3	ENSMUSG00000063904
Peli3	ENSMUSG00000024901
Mrpl11	ENSMUSG00000024902
Npas4	ENSMUSG00000045903
Slc29a2	ENSMUSG00000024891
Brms1	ENSMUSG00000080268
Cd248	ENSMUSG00000056481
Cnih2	ENSMUSG00000024873
Rab1b	ENSMUSG00000024870
Klc2	ENSMUSG00000024862
Sf3b2	ENSMUSG00000024853
Gal3st3	ENSMUSG00000047658

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

REST	MA0138.2	chr19:4989159-4989180	TTCAGCACCGCGGACAGCTCC	+	10.28
REST	MA0138.2	chr19:4989238-4989259	TTCAGGACGTCGAACAGCTCC	+	6.3
REST	MA0138.2	chr19:4989120-4989141	GTCAGCACTGTGGACAGAGCT	+	7.35
REST	MA0138.2	chr19:4989202-4989223	TTCAGCACCGCGGGCAGCGCC	+	8.43

Enhancer Sequence

AGACCTATTT CTGCCAACAC CTGTTGACCC TATGCTTGTG GATCTTGGCC AGGAGACCTG 60
TTGCTAAAAC TATCTAGCCA GGGAGCCCCT GGACTTCCAA GCCTGGCCGG AACCTCAGCA 120
GCCCTCTGCT GTCAGCACTG TGGACAGAGC TCTCCCGAAA GGACTGGGAT TCAGCACCGC 180
GGACAGCTCC TGCGAAAAGG GGCTATGGCC ATTTCAGCAC CGCGGGCAGC GCCAGAAAGG 240
GTGATGGCTT CAGGACGTCG AACAGCTCCA GAGCGCATAG AAAGACCCTC TCAGCATTTT 300
CTAGCACAAG CTACTCTTCC TCATACTTTG CCTTTGCAGG CTTTCCCTGT AGCTTGCCAG 360
GCTTCCTTCC GTACCCTCCC CGGATTCCTG GAGTGCCTCT GAGGCAATGG GAGCCTGGAC 420
CATTCTGTTT TAGCGCTCTA TCTCACACAA ATCCAGTGCT AGGACTATCG TTTAGGCTAG 480
TCTAGATGGA GCTCAGAAGA AAAAGTAGGA AGTCCAGGGT CCCCTCAAGT CCCTTCTCTC 540
CACAGGCTTC CAGCACGCTG TGCTAGACAA GCGGCAGTTT TAGCACATTC CCTCAGCTCC 600
TCCATCCCTG GTCCCCGTCA GCTCTGGTCT CCGGTAGCCC AAGCTGCTCA 650