EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-12478

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr17:56812830-56814100

Target genes

Number: 31
Name	Ensembl ID

Shd	ENSMUSG00000039154
Fsd1	ENSMUSG00000011589
Mpnd	ENSMUSG00000003199
Sh3gl1	ENSMUSG00000003200
Hdgfrp2	ENSMUSG00000002833
Dpp9	ENSMUSG00000001229
Uhrf1	ENSMUSG00000001228
Kdm4b	ENSMUSG00000024201
Ptprs	ENSMUSG00000013236
Safb2	ENSMUSG00000042625
Safb	ENSMUSG00000071054
2410015M20Rik	ENSMUSG00000049760
Rpl36	ENSMUSG00000057863
Lonp1	ENSMUSG00000041168
Tmem146	ENSMUSG00000040828
Ranbp3	ENSMUSG00000002372
Vmac	ENSMUSG00000054723
Ndufa11	ENSMUSG00000002379
Nrtn	ENSMUSG00000039481
Dus3l	ENSMUSG00000007603
Prr22	ENSMUSG00000090273
Rfx2	ENSMUSG00000024206
Mllt1	ENSMUSG00000024212
Clpp	ENSMUSG00000002660
Alkbh7	ENSMUSG00000002661
Pspn	ENSMUSG00000002664
Gtf2f1	ENSMUSG00000002658
Khsrp	ENSMUSG00000007670
Slc25a23	ENSMUSG00000046329
Tubb4a	ENSMUSG00000062591
Tnfsf9	ENSMUSG00000035678

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

PLAG1	MA0163.1	chr17:56813865-56813879	CCCCCTTTTGCCCC	-	6.05
RREB1	MA0073.1	chr17:56813071-56813091	CCACCCCCCACCCCCACCCC	+	7.47
TFAP2B(var.2)	MA0812.1	chr17:56813258-56813269	AGCCTCAGGCT	+	6.02
Zfx	MA0146.2	chr17:56813232-56813246	GGGGCCTGGGCCTC	+	6.08

Enhancer Sequence

GAAGGTAGGG GAGGCGCCGC CGGGGGCCAG CTGGCGGCAG GCGGGCGCGG GGCGGGAAGT 60
CAAGGGAGCC CCAGAGTCGA AGGGCGAGCG CTTCAGGTTG TGGGAGTTCG GCCTCACCCG 120
GTCTGGGCAC CCAGCGGGCC CCCCTACCGT GGAGTCTGGT CCCCGGCCGG GTTCCTCGCG 180
GCAGCCCCGG CTTCTGCCTC CTCCCGACCT CGAGGCTCCT CGGCCGCGCC GCGACCGCCT 240
CCCACCCCCC ACCCCCACCC CACGCCTTCC GGCCTCGCAG GCCGCCCGGG GAGCCCAACG 300
GGCCTTGAGA CGCGGCTCCG CGGCCTCGAA CGAGGCGGGC GAGACCTCCG AGCCTGCTCG 360
CGGGCCCAGC CCGCCACGCT CCCTTCCCCG CTTCCCTCGC CTGGGGCCTG GGCCTCCTTC 420
CCCGGCATAG CCTCAGGCTC AGGTCCGGCT CTCCTTCATC CCGCGAAGGT GCTCGGCCAC 480
CCCGACCTGT AGCTTACACC CCGAGGTCTG CTTAAACCCG GACCGGGCGC CCCTATTCCC 540
GCCACAGGGC TCCAGGTCCT TTGAGGTGCA CTTGATGCCC CCCATTTAGG CCTGGCCATC 600
TGATCTTGAA ACTCCTAACT GCTTCTTCAC ATCCCGTTTT TATTTTTGAC ACCGTGAAAC 660
CTCCCCTCTG GAGTCGACAT CCCATTTAAG GGGTTTGAAT ATGGTAGGAC TACCCAGTTG 720
TTGCAGAACC TGCACGTCTC TTCCTACCAG TCTTCAGAGT CCTTTGGAGT GCAGCTTACA 780
TCCCCTGATT TAGGCTTGGC CACCTGATCT GTATTTCCTA ATTCAGTGGT TCTCAATCTT 840
CTTAATGCCG TGACCCTTAA ATATAGTTCC TCATTGTGGT GACCCCAACC ATAAAATTAT 900
TTTTGTTACT TCTTCATAAC TAGCTTTGCT ACTGTTATGA ATGGTAATGT AAATGTTTCT 960
GGATTTCCTA TTTAGACATT TGCCAAAGGG GTGGCAACCC ACAGGTTGAG CACTGATATA 1020
CTAATTGCTT CCACACCCCC TTTTGCCCCG TGGCCCTGAC TCCCTGAGCA CTCTGGGATG 1080
TAACACTTTC TCAGTCAGCC TGATGCTTGA CACCCAGTGG TGGCCCCTTC GGGGCTCCTC 1140
CAGGGTTCAG TTTGGGGACT TCAGGGTCTG TTTTTTTTGT TTTTTGTTTT TTAGATTTAT 1200
TTATTTTTAT TTATCTAAGT ACACTGGAGC TGTCTTCAGA CACATACCAG AAGAGTACAT 1260
AGGATCCCAT 1270