EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-06253

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr12:66003160-66005210

Target genes

Number: 8
Name	Ensembl ID

Gm527	ENSMUSG00000047227
Klhl28	ENSMUSG00000020948
Fam179b	ENSMUSG00000035614
Prpf39	ENSMUSG00000035597
SNORD127	ENSMUSG00000087790
Fkbp3	ENSMUSG00000020949
Fancm	ENSMUSG00000055884
Mis18bp1	ENSMUSG00000047534

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RARA(var.2)	MA0730.1	chr12:66004494-66004511	AGGTCCTGGAGAGGTCA	+	6.55
Rarb(var.2)	MA0858.1	chr12:66004494-66004511	AGGTCCTGGAGAGGTCA	+	6.41
ZNF263	MA0528.1	chr12:66004972-66004993	GGAGAAGGAAGAGGGAGGGAC	+	6.21
ZNF263	MA0528.1	chr12:66004966-66004987	GGAGTAGGAGAAGGAAGAGGG	+	6.29
ZNF263	MA0528.1	chr12:66004995-66005016	GGAGGACAAAAGGGAGGGGAA	+	6.38

Enhancer Sequence

ACTTCTGTTC TCAGGGATCC AACTAAAACC AAACACTGGC CTTGATGTTT CTCACCAAAA 60
CTTTGTCTTC ATCTGCTTTC AGCTCCTGGG GCCTCGGTGA ATCATCAGCC TCTAAGAACC 120
ACATTAAAAA TAAAAGTGCA AATAAATAAC AAGCACTCCC AAGTCACACT GTTTTACTTC 180
CTACTGCAGA TGGACCTTGA TGGTCTCTCG AGAACCAAGC AATCCATTGC CTCTTGAAGA 240
CAGACCTGAA TATGAGCTAG AAAGGAAACG GGGCTAGGGC TGGCAAATAG CTAAATGGAT 300
CCCTGAAGTG CCCGAGCATC AGCGCCTTGA CATTTTGAGG TCAGTTTTCT CTGGCTCCAT 360
CGAGAGGTTG TCCTTGCCGA GTGCTCTGTG TTCACACCAT CAGAACCTCA GCAAGTCCAC 420
GATCGATGAA AGAAGTCTTC CCTGATTTAT GAAAGCACCT CTGTACTGTC AGAGCCATAC 480
CCCTGCTTTC TCAAGCAGCA GTCTCCAATC CGTCCTGACC TCGAAATGAA CCTTTCTTCC 540
TGCCAAACCC AGGCAGAGCT GCACTCCAGC AACACCATCT GCCGCAGCTG GCTGCCACAA 600
TTTAAGCCAG CTGCTGCACA TCAGACAAAA GCCAGTCTTC CCACACAGCA CTTTGCCTCC 660
AAATTCCAGG CTCTCTGATT CTACTCATTT GATCCCACAG AGAGCCGCAT TACTGGGAAA 720
AGAAAATGAG ATTTGGATTG CATTAGGCTG ATGCTAAATT CAAAACCTGT TCCTTCATAC 780
ATACTCTCCT GTACATATCC CAACTAAAAG AAACACAGGT AAGGGACAAT CATCATTTGG 840
AAAATCACCA CCTTATTAAC AGCCAAGCCA GCACTCAAGG ACCCTTAGTG CTGAGGTTGG 900
ACAGGAACTA AATTAAAGTC TACCTGAGTC CCTAACAAAA CATCTCATGT CCTCCCCCTA 960
AAGCAACCAT ATGCCTAGAG GAAACTCCAG CATTATGTAA CAACCCAGTC AAACACCTGC 1020
ATGGTGAAGA CAAAAGGCAG AGAGGTTTTG TCTAGACAGA GGGACATGGC AATTCAAGGG 1080
GTGTGAGACA CGGGGAGTTC ATTGCCTGCT TTGATCTACA GGACGGAGGA TCTGAATGTG 1140
CCTAACATGT GGACGTAGCA AGAACAAAAC AGGACACACA CTTAAGAAGC AACGCTTGCA 1200
GTTCAGTCCC TACTGATTCA GTTAAGGCTG CAAAAGCCAA GTATTACGTC AGGAATGGGG 1260
CTTAGAAAAA AAAAAAAATC TGTTTCTCAC AGCTGTAGAT GCAGAAAGGT CACGATTAAG 1320
GTGCCAGTAA GATCAGGTCC TGGAGAGGTC AGAGTTGGAA GCAAGTCTTC TACAGTGCAG 1380
ACCTCTTCCT CGTGATTAAG TCGCCTGCCC AAAGGCCAAG TTTCCTAATT CATCATAATG 1440
GGGGTTATGA TTTCAGCCTA AGAATTTTGA GAGAAATGCA AGCAGTTCAA AATATCAACC 1500
TGTCTATTGG AAACAGCGGT AGCTCAGTAA AGGACCAACC TTTCACTCCT TGGTTAGGGG 1560
ACACTAGGAA AAGGACAAAA TGTGGATAAA AATGTTTGCA TAAGTAACAG ATGTGCAGCT 1620
TGGTCTTCAT TGTGGGTCCC CTAACAGCAG GGGACTCTGT TGCCTGCCTT TTGATCCCTT 1680
TCTCTATCTG GGCTGCCCTG TCTAACTTCA TAGAAGATGC ACCTAGTTCT ATGGCAACTT 1740
GGTATGCCAA TGTGGGTTGA TATCCATGGA GGCCTCCCCT TCTCTGAAGA GAAAGGGTGG 1800
GGAATGGGAG TAGGAGAAGG AAGAGGGAGG GACTAGGAGG ACAAAAGGGA GGGGAAAGCT 1860
TCAGTCAGGA TGTAAAGTAA ATAAATTAAT ACAATTTGCA CAACACATGA AACTCAAGAA 1920
GAAGGAATAG CAAAGGGTGG ATCCTTCATC CCTCCTTAGA ATGGGGAACA AAATACCCAT 1980
GTAAGGAGTT ACAGAGACAA AGTTTGGAGA TGAGACGGAA GAAATGACCA TGCAGAGACT 2040
GCCCCATCTG 2050