EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-05105

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr11:101004780-101006020

Target genes

Number: 24
Name	Ensembl ID

Nkiras2	ENSMUSG00000017837
Atp6v0a1	ENSMUSG00000019302
Naglu	ENSMUSG00000001751
Hsd17b1	ENSMUSG00000019301
Coasy	ENSMUSG00000001755
Mlx	ENSMUSG00000017801
Psmc3ip	ENSMUSG00000019303
Fam134c	ENSMUSG00000017802
Tubg1	ENSMUSG00000035198
Tubg2	ENSMUSG00000045007
Cntnap1	ENSMUSG00000017167
Plekhh3	ENSMUSG00000035172
Ccr10	ENSMUSG00000044052
Ezh1	ENSMUSG00000006920
Ramp2	ENSMUSG00000001240
Vps25	ENSMUSG00000078656
Wnk4	ENSMUSG00000035112
Ccdc56	ENSMUSG00000017188
Becn1	ENSMUSG00000035086
Psme3	ENSMUSG00000078652
Aoc2	ENSMUSG00000078651
Rnd2	ENSMUSG00000001313
Vat1	ENSMUSG00000034993
Nbr1	ENSMUSG00000017119

TF binding sites/motifs

Number: 13

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr11:101005488-101005506	TCATCCTTTCCTCCTTCC	-	6.19
Nr2f6(var.2)	MA0728.1	chr11:101005745-101005760	TGAACTCCTGACCTT	-	6.04
RFX1	MA0509.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.25
RFX1	MA0509.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.25
RFX2	MA0600.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.53
RFX2	MA0600.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.53
RFX3	MA0798.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.18
RFX3	MA0798.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.18
RFX4	MA0799.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.56
RFX4	MA0799.1	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.56
RFX5	MA0510.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	+	7.6
RFX5	MA0510.2	chr11:101005258-101005274	AGTTGCCATGGCAACT	-	7.6
Rarb	MA0857.1	chr11:101005745-101005761	TGAACTCCTGACCTTC	-	6

Enhancer Sequence

AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAACTGCA GTTACAGGCA GCTGTGAAAC 60
ACCTGACATG GATGCTGGGA ACCAGACTCT GGTCCAGTAC TTGTTCTTTT GCTTAGCTGC 120
CCTGGGTGAA CAGTAAGAGC TCTTGACCCT CTTAACCACT GAGCCATCTC ACCACTGCAC 180
CCCTACCCCA GTGCTTTCAA CCTTAAACTT GACCGCTTAT TCCTGTGACT GCATTTCCGG 240
CACCTCTGTT TCCTCTTTGT CTCACTGCGT AGGGCTGCTT TCTCTCTACC AAGTCATCTA 300
TGGCTTTGTG GATTTTACAT CCATCTCCCT GGAGTCTGGA TGACCCGATC TAATTATTTT 360
TTTACTCCGT CATCTTCAGC TGACCCCTCT GATGAAACCC GGGACTCTCC CTGCCTGCCT 420
GCTCTCTCAG TCCTCCAGCG GAGCACCGAA GGAGTCAGGG CAAGCCTAGG CGGCAAACAG 480
TTGCCATGGC AACTCAATTT CCAACCAGGC GATCTTCCTC TACCCCCTGG GCTGAGAGTA 540
CTGGCCTGCC CTCGCCAGCC CTCTCCTGTT TCCTACCTTT GATTCCCTCC CCTCTCCTCC 600
GAATTCAGAA CTTCACTCCT ACTTGACAGT GAAAATACAA GCGTGCTGAA GCCCCGTCAA 660
CTTCCTGTCC CCCCACTTCC ATCTCTACTG ACTTATTTTT AACTACCCTC ATCCTTTCCT 720
CCTTCCGGTA GTTAATCTCT CCACCTGAGC CCTGAATCCA GTAGCTCCAC CTCCTCAAAG 780
ACCTTGGAGC GCCAAACCCC TGTCTCTTCA GTATCTTTTT TTTGTTTTTG TTTGTTTTTC 840
TTTTTTTTTT AAAGATTTAC TCATTTATTT ATTATATGTA CACTGTAGCT GTCCTCAGAC 900
ACTCCAGAAG AGGGAGTCAG ATCTCGTTAC AGATGGTTGT GAGCCACCAT GTGGTTGCTG 960
GGATTTGAAC TCCTGACCTT CAGAAGAGCA GTCGGGTGCT CTTACCCACT GAGCCATCTC 1020
ACCAGCCCTC TTCAGTATCT TGATATGGAA GTTTCCTCCT GCATTCTAAA AAGCTGAGTT 1080
TCTCACAAAC ACCACATTCC AGATCCATCA GGACACAATC TTCCTTCTTG TCTGTCTTTT 1140
AGAATTCTTA TTTTTAAAAT TATTGTTATT ATATTATTAG CAGTAATTTT ATTTTTTATA 1200
TATTTAGTTT TTATTTATTA GCATTATTTA TAATTTTTGA 1240