EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-04561

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr11:77700490-77701880

Target genes

Number: 30
Name	Ensembl ID

Ankrd13b	ENSMUSG00000037907
2210008F06Rik	ENSMUSG00000091461
Trp53i13	ENSMUSG00000044328
Taok1	ENSMUSG00000017291
Nufip2	ENSMUSG00000037857
Cryba1	ENSMUSG00000000724
Myo18a	ENSMUSG00000000631
Gm10277	ENSMUSG00000069804
Pipox	ENSMUSG00000017453
Sez6	ENSMUSG00000000632
Phf12	ENSMUSG00000037791
Dhrs13	ENSMUSG00000020834
A030003K02Rik	ENSMUSG00000087050
Flot2	ENSMUSG00000061981
Mir451	ENSMUSG00000070065
Eral1	ENSMUSG00000020832
BC017647	ENSMUSG00000037750
Gm12571	ENSMUSG00000060727
Traf4	ENSMUSG00000017386
Nek8	ENSMUSG00000017405
Tlcd1	ENSMUSG00000019437
Snord4a	ENSMUSG00000077625
Rpl23a	ENSMUSG00000058546
Rab34	ENSMUSG00000002059
Supt6h	ENSMUSG00000002052
2610507B11Rik	ENSMUSG00000010277
Aldoc	ENSMUSG00000017390
Pigs	ENSMUSG00000041958
Unc119	ENSMUSG00000002058
Poldip2	ENSMUSG00000001100

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr11:77701346-77701366	CCTCCCCCCAACCCCCACCC	+	6.16
RREB1	MA0073.1	chr11:77701349-77701369	CCCCCCAACCCCCACCCACC	+	6.26
RREB1	MA0073.1	chr11:77701350-77701370	CCCCCAACCCCCACCCACCG	+	6.71
RUNX3	MA0684.1	chr11:77701386-77701396	TTTGCGGTTT	-	6.02
ZNF263	MA0528.1	chr11:77701143-77701164	GGAGAAGGCGGGGCAGGAAAG	+	6.05

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_04428	chr11:77698990-77702042	E14.5_Brain
mSE_10088	chr11:77698129-77701620	Embryonic_stem_cells

Enhancer Sequence

CTGAAATCCT AGGGTTACCA GGGAACCCTA GCAAGTTTGC AACTCCTACC TCCCAGAATG 60
TCCATCACCT TAACAGGGAG CCCTGGGTAT GGAGTCCGCC TTCCTCACAG CCCACTTTGC 120
TCCAGAAGTG AGCAGAGGTC GCTGAAGAAC CCTCTGGACT GTTGATGCCT CTGTGGCCCA 180
TGTACCACAG GGTCTGATCA CGAAGCAGTT ACTAAAAGAG GCCTGGGGTC AAGGGGGAGA 240
GGAGAGCAGA GAGGTCCTGG GAGGGGTGGC CAACTCTCCC GGAATCTTCC ATTTCACACC 300
CTGGGGCCCT GGCTGCCTTT CTCTTTGCTC CGGTTTAAAG TGCCAGGTAT GCCAGCCCTC 360
GGCATCACCT TGGGGAAGGG CCTGGTAATG GCTGCTGTCT TTGTAGGTTT GGGAACAGCT 420
CTCTGTATTT CATCTTCCGC TCAGTGGGCC GAGGTGGAAT TGGTTAACAA AGATTGCTCC 480
AGGGAGGGGA TGTGGCTGAC AAGCCAGACA CTTCGCAGGC ACAGGAAGCA GCAGCTGCGG 540
AGGGGGCCAC CAGGTTCTGC CAGCTGCTGT ACTGCCTACG GCTGTGATCT TGTCTGATAT 600
TGTCAGTGAA GCAGGGGCAG CCCGGGTCAG GAGCTGGATA GTAGAACTCA AAGGGAGAAG 660
GCGGGGCAGG AAAGAGATGG TCTCAGAGCC TGGCTTTTCT GTTGGTACCA GCATCCCGGC 720
TGCACACATC ACAAAAGACT CGGGCCTTAT GATCCGACAC ATGTCATTGT CTGTTCCCAG 780
AATGTATGCA AATAACCCGA GCCCACCCGT GTTTCATATG CGCTGTCACA GGAAGCAGAA 840
CAGAAGAACT GGGCAACCTC CCCCCAACCC CCACCCACCG CTGGCTCAGA AAGGTTTTTG 900
CGGTTTTTCA AATCATCATC AGATGACATT AAATACACTC ATTTCTATCA TTTATCGTAT 960
GGTATTATGC CGGTGTGTCT AGAAGGATCC AGAGAGAAGC AAGAACGACA GAGATGATGA 1020
AATCATTTAG AAAATCAAAA TTAAAAGCAA AGCTAAGGCA ATTTGGCTGG CATTCAGCCC 1080
AAAGGTGGAG AACGGTATTC GGATTCCATT CAGAGTGGGA ATACCTATCT GTACTGCATC 1140
CTACTCTGTA AAAGGAATAA TAATAAAAAA ATCTAGTACA CGTGAGTAAA TTAGGGTAGC 1200
CGTAAGAAAG GAGTTGTTAA TGACAGAATA ATAGCAATGG CAATAATAAT ACTTAGCACT 1260
CTATCGTGCT TTGGAGGCTT TACGGCACAT TCACATTACT CTTCATCTTT CTTAATTGGA 1320
GCTGTGAGAC ATCTGAGCAC GCTTCTCATG CAGGGCTGCA GCGTAAGGCA CGGGAACACT 1380
TTTCAGACCT 1390