EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-00685

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr1:75377350-75378680

Target genes

Number: 19
Name	Ensembl ID

1810031K17Rik	ENSMUSG00000033159
Fam134a	ENSMUSG00000049339
Atg9a	ENSMUSG00000033124
Ankzf1	ENSMUSG00000026199
Glb1l	ENSMUSG00000026200
Stk16	ENSMUSG00000026201
Tuba4a	ENSMUSG00000026202
Dnajb2	ENSMUSG00000026203
Dnpep	ENSMUSG00000026209
Des	ENSMUSG00000026208
Gm15179	ENSMUSG00000085653
Speg	ENSMUSG00000026207
Gmppa	ENSMUSG00000033021
Accn4	ENSMUSG00000033007
Tmem198	ENSMUSG00000051703
Obsl1	ENSMUSG00000026211
Inha	ENSMUSG00000032968
Stk11ip	ENSMUSG00000026213
Slc4a3	ENSMUSG00000006576

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr1:75378658-75378669	GCCCCGCCCCC	+	6.02
KLF5	MA0599.1	chr1:75378658-75378668	GCCCCGCCCC	+	6.02
Sox3	MA0514.1	chr1:75377710-75377720	CCTTTGTTTT	+	6.02

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_03786	chr1:75377427-75380074	Cerebellum
mSE_04888	chr1:75376234-75378656	E14.5_Heart
mSE_06697	chr1:75375788-75378645	Heart

Enhancer Sequence

AGCAATAAGG TCAGGAGACA CACCAGAGAA CAATGTGGTT CTTTATGACA CAGTGGTCAA 60
TAACGTAGTC AGAGAACCTA GGTTCCCTCA ACTTGTTAGC TCTGTGACCT GGGACGAGTA 120
ATGGCTTTGT GGGACAAGTA ATTGCTTATG GGAACTAAAT GAGTTACTCA CACAAAGTCC 180
TCGGCATAAC TTAGCCCAAT ATAGACCCAA GAAGGCCGTG CTTATCACTG TGCTCTGAGC 240
TGGGACTGAC ACCACCCAGT GCATGCTGGG ATGAGACCTG AAGTGATACT AGTTTTCTTA 300
GCCTCAGCCA CTTGTCAGTT AAACAAGGAT GGGAATACTC CTGAGAGTTT CAGGCTCCTG 360
CCTTTGTTTT GAATGAACTG GCAATTGTAA AGGGCCAGTT TACAAATGCT AATGAAACCT 420
AGCTACATTG TTGTTAGGAA AGGAAGCTGG AACTTTGTTT AGACACTGTG TGTGCATGCT 480
GCAGAATAAG GTGGGCTGGG CAGGAGCAAG GGACACACCA AAAATCTTGT AAGTAGCTCA 540
CTTGTGAGAA CATGAGTTGA CTTTGATTAG GAATATCTAT GAGCAACCTT TGGCTGCGGT 600
GGTGTGGTGT GTGTGTGTGT GTGTCTCTGT GTGTGTGTGT GTGTGTGTGT GTATGGACAA 660
ACAGATGGAT GGAGGGGAGG GGACATCACA GAAACATCCA GAAATTAGAG CCAAGAGAGG 720
CAAGCCCTTT TTTGAGGAGC CTGGGTCCAA GACAGCCCTT AGTCTCAACC CAAGGACCTT 780
TGCGCCGAGC ATGACCTAGG CGCCCCCACC CGGTGCTGTA CCCTGAGGTG AGTTGGGTGC 840
TGTCTGACAG AGTGCGTGTG CGCATGTTTG CGGAGTACGC CAGAGAAGAT GCTGCTGGCC 900
TTCCAGAGCC AGCCTGCAGG AGGAAAGGGG ATGCGGCAAG TAGGCCGCCT CTCGCTGCCT 960
ATGGAAGTGG CCTGAACTAA AGGCTACAGC ACCCCTTTCT GTGCCTCAGT TTCCCCATGT 1020
GCCTGGGGCC CGAAAGGCAG ATGTGGGGTG GGGGTGCAGG GTCTCAGCGT CGGGTGGTAT 1080
TTCGTGGGAG AGCTGGAGAG CAGGCGAGTG CTGTCCCAGG GTGGGCAGAA GGGCTGGAAA 1140
GGGAAGGGTC GCCAGGTGGG GCGCAGGCTG GCGGAGGAAG GGCGGGCTCT GGGCGCCGCC 1200
GCCTTCATCT TACCCCCACC TCGGCTCCTG AGGCCCGGCG GCTCCTTCCG CCACCCGCGC 1260
CGGCTCCTGC CCGCTCCCCA ACTCGCCCCC GGCCCCGCCT CCGACTCCGC CCCGCCCCCG 1320
CCTGTCCCCT 1330