EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM121-00376

Organism

Mus musculus

Tissue/cell

NPC

Coordinate

chr1:54705170-54705870

Target genes

Number: 4
Name	Ensembl ID

Gtf3c3	ENSMUSG00000041303
Pgap1	ENSMUSG00000073678
Sf3b1	ENSMUSG00000025982
Hspd1	ENSMUSG00000025980

TF binding sites/motifs

Number: 7

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

E2F6	MA0471.1	chr1:54705790-54705801	TCTTCCCGCCC	-	6.14
Nr2f6	MA0677.1	chr1:54705722-54705736	TGACCTTTGACTTC	-	6.67
RXRB	MA0855.1	chr1:54705722-54705736	TGACCTTTGACTTC	-	6.44
RXRG	MA0856.1	chr1:54705715-54705729	TGAACCTTGACCTT	-	6.18
RXRG	MA0856.1	chr1:54705722-54705736	TGACCTTTGACTTC	-	6.29
Rxra	MA0512.2	chr1:54705722-54705736	TGACCTTTGACTTC	-	6.37
Rxra	MA0512.2	chr1:54705715-54705729	TGAACCTTGACCTT	-	6

Enhancer Sequence

ACCTAGAAGC TTTGGCAGAG GGAGCAGACA CAGTATTCAC AATGCTGATT TCATTACCAA 60
ACAACTGGCA ATTGGCTTGC ACTTCCACAC CAACCATTTC TGCTTCCTGC TGTCATTTCC 120
TTGGCTCCTT TTCAGGCACA CTGTCACTTG TGGCATGACC TTGGCTGAGC AGCTAATTTG 180
CTACCCTACT ATTGAAGGAC AGTACCAGCC ATTCTGATGC CCTTACAACG TTAGTATTTT 240
CATCTTAGAG CAAATTCAAA TGAATGGTAA TTTCTTATTT GACTTGCATA TTGTTTCAAG 300
TTTTGGCACA ATATAATTTC ACCTGAAATG TTATTGGATA AATTTGGGAT CCATTACTCC 360
ATTGAAAACG TACTCACACA TTTCTTCGGG TGCTATTTCA TTTGTGTTTA ACGAAAGAGC 420
ATGAACAATG TTCACATTCA TCTGGCAGCT TTAACTGAGA TCCCAGGAAG AAATTCTAGG 480
CATTTACACA CTTCCTATGG AGGAGGAGGG GTAGACTCCC TTAAGAGGAC AATTATGTTT 540
AAAGATGAAC CTTGACCTTT GACTTCTAGT GAAGAAGTAA ACATCAGAGT GAGAAGAGCA 600
TGCAAGCATT TCCCATCTCC TCTTCCCGCC CCTCCAGGAG ACATGAATTT CACCTTGACC 660
CACCTCACAG AACTCATTGG TGAGGATGTG GGAAAAAAAC 700