EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM115-08800

Organism

Mus musculus

Tissue/cell

Neuron_cortical

Coordinate

chr19:4717770-4718810

Target genes

Number: 19
Name	Ensembl ID

Pcx	ENSMUSG00000024892
Lrfn4	ENSMUSG00000045045
Rce1	ENSMUSG00000024889
Gm960	ENSMUSG00000071691
Spnb3	ENSMUSG00000067889
Rbm4b	ENSMUSG00000033760
Rbm14	ENSMUSG00000006456
Ccs	ENSMUSG00000034108
Ccdc87	ENSMUSG00000067872
Ctsf	ENSMUSG00000083282
Actn3	ENSMUSG00000006457
Zdhhc24	ENSMUSG00000006463
Bbs1	ENSMUSG00000006464
Peli3	ENSMUSG00000024901
Mrpl11	ENSMUSG00000024902
Npas4	ENSMUSG00000045903
B3gnt1	ENSMUSG00000047379
Cnih2	ENSMUSG00000024873
Klc2	ENSMUSG00000024862

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr19:4718391-4718409	CAATGCTTCCTTCCTTCA	-	6.06
RREB1	MA0073.1	chr19:4718763-4718783	ACACACACCCCCCCCCCCCC	+	6.16
ZNF740	MA0753.2	chr19:4718770-4718783	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4718771-4718784	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4718772-4718785	CCCCCCCCCCCCC	+	6.03
ZNF740	MA0753.2	chr19:4718773-4718786	CCCCCCCCCCCCC	+	6.03

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_08662

chr19:4715354-4723038

Liver

Enhancer Sequence

CTCGTTTGGC CTCACTGGGC ACCAGGCAAA CGCATGGTAC ACATGCAAGC ACACACAGGT 60
ATACACACAC ACACAGAGCA AAACTTTCAT ATCCATAAAA CAAAATTGAA AAGACATTTT 120
TTAAAGTCAG AAAGAACCTT GCTTCAAAAC CCAGTATGTA GCTTCGAGCC AAATAACCCT 180
GAGCCAGTGG GTTAACAGCA GCAGCAGCGT GGCTACTTCA TCTATGAATC AGGGAAGGCC 240
CTCCGCTCAT GAGTGACAGG ACACACGGCA CAACTGACAC TTGTTAAGAA CTTAGGAAGC 300
ATTTTCTGTA GCAACAAAAG AGCCCTAGAG GTAAGAGCCA TGCCTTGCCC CCTATGAGCA 360
CCTAGACATT TGGTCCGTGC CTGTCTCAGT TCGGCCATCT TTATGCTTCT GTGGTAATTT 420
ACCTCAGCTC TAGAGCAGAA TCTGGGCCTT TAATCTCCAG GTACTTACAA AGAAGACTCA 480
GAAGAAGAGT AGAGCGGGAG TCTGAAACCA TCATCTTAAA GCTGCTGTGT GCGTGACCCT 540
GAATCCTTTG TGTCTTCCTT TAGCATACCT GCTCTGTCCT ATGGAGCTCT GGCCTGTGGC 600
CCTTGAAGCC CTTGCAGGCT CCAATGCTTC CTTCCTTCAA GTGCATGTGT CTCTCCTCAT 660
CATTCCTGTC TAGCCACTCC CTCAGGGTGG CTTCCCACTG GGGGCTGATT TTTTTTTCAC 720
CAACAAAAGA AAGCTACCCA GTCATAACCT CTGGCTCCAG CAAAGCCACG GAGAGCTGGG 780
GCAAGCAGAT AGAAGAACAT GATAACCCAG CATGGTGGTG CACACCTTCA GTCCCAGCAC 840
GTGGGAGGCA GAGGCAGGGG AATCCCTTAC GTTTAAGGTC AGCTTGGTCT ACAAGGCAAG 900
TTCCAGGACA GGCATGGCTA CAGAGATAAG CCATGTCTTG AAAAATCCAA ACAAAAAGCA 960
GAAGAAAGGC CTGGTGAGCA GCGGCTCAGC CTCACACACA CCCCCCCCCC CCCCCCGCGC 1020
GCTGCTCATC AGCCACGTCT 1040