EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM098-16383

Organism

Mus musculus

Tissue/cell

Lung_neonate

Coordinate

chr3:88296220-88297150

Target genes

Number: 18
Name	Ensembl ID

0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Paqr6	ENSMUSG00000041423
Bglap	ENSMUSG00000074489
Bglap2	ENSMUSG00000074486
Pmf1	ENSMUSG00000028066
Slc25a44	ENSMUSG00000050144
Sema4a	ENSMUSG00000028064
Lmna	ENSMUSG00000028063
Mex3a	ENSMUSG00000074480
Rab25	ENSMUSG00000008601
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604
Ssr2	ENSMUSG00000041355
Rxfp4	ENSMUSG00000049741
Rit1	ENSMUSG00000028057
5830417I10Rik	ENSMUSG00000078684

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOSL2	MA0478.1	chr3:88296933-88296944	CTGAGTCATCC	-	6.32
JUNB	MA0490.1	chr3:88296933-88296944	CTGAGTCATCC	-	6.14

dbSUPER

Number of super-enhancer constituents: 10
ID	Coordinate	Tissue/cell

mSE_01438	chr3:88250596-88336770	Th_Cells
mSE_05195	chr3:88296240-88300234	E14.5_Heart
mSE_05600	chr3:88296215-88297657	E14.5_Limb
mSE_06577	chr3:88296200-88301120	E14.5_Liver
mSE_06808	chr3:88296205-88301078	Heart
mSE_07384	chr3:88296224-88301022	Intestine
mSE_09381	chr3:88296207-88301056	MEF
mSE_10397	chr3:88296293-88296951	Embryonic_stem_cells
mSE_10397	chr3:88296975-88300236	Embryonic_stem_cells
mSE_11449	chr3:88296231-88301024	Placenta

Enhancer Sequence

TAACGCAGGG TACATGTTTA ACACTGTAAC AGTTATTTGA TATCATTTAA AACAGATTTT 60
TAAAAGAGAG AAAAAATTTT GAGGTAAATA GCTGTCCTCT ATCAAACACC ATTTCCTTCC 120
TAGGAGAGTT ATAGACCTCA GCCTGGCTGG CCATGCAGAC ACCGGACAGG CCTAGGAGGC 180
TGGCTGTGTC TGCATAGAGG TGTGGTCCAG TTCCAGCCCA CTGGGCGTGG TAGTGGGAAA 240
GCTGGATTTG TGCTGGGTTG GTATGGAAGG CTGGGTGGGG CAGACCAGGG GTGCTGGGAA 300
GGGGTAGTAA CCGGGGCTCC TCCTGTGACT CATGCTCAGA GCCACAATAC CAGGGCAGGG 360
GGCGGGAAGT GGTCTAGTGC TCTCAGGGGG TCAGTGAGAC CCTGCCTGCC TATACCCTGT 420
GCCAGGCCCG GTGCCATGCT CTGCGTGAGC AAAGGAGTGG TTGCATCCCT GCTGCCTCCA 480
GGGGCCGGGG CCAGAAGGGT TGGGTATCCG GTTTAACTCA TCCCGGTGGG CAATCCTGGC 540
ACACGGAGGG GCATGGGGGA GGGGAGCAGA GCAGTCAGGA ACAAGGTAAG TGAGAAGCCG 600
ACGCGGGTGA GGGGTGGGGG GCCAGGCTGG GGTCCCCCGG GCTGCTTTAG GGAAGAAAGG 660
CAGCAGTAGC AGAAGGGCTG GGCTGGGCAC GGGGCCAGGC GCTGACCCGC CCACTGAGTC 720
ATCCTCCTCA GCCACCTCAG ACGCCAGATA TGGAAGCCGC GCGGCCTGTT TGGCCTGGTT 780
GCCCGGAGCA ACAGCCTAAG CCCGGAGGGA GTGGCCTGCA TTTCCTCCCC CTGTCCTGGG 840
GGAGGGACAG GCGGCCCAGA CTCTACACTG GGCTAAAAAT AAGGAGCAGG AGGGGATGAC 900
GGCCCGCGCC CCGCCCGCCC GCCTGCCGCC 930