EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM092-00588

Organism

Mus musculus

Tissue/cell

Liver_E14.5

Coordinate

chr1:173026320-173029120

Target genes

Number: 28
Name	Ensembl ID

Atf6	ENSMUSG00000026663
Gm2962	ENSMUSG00000089838
Fcrla	ENSMUSG00000038421
Fcgr2b	ENSMUSG00000026656
Fcgr4	ENSMUSG00000059089
Fcgr3	ENSMUSG00000059498
1700009P17Rik	ENSMUSG00000026649
Sdhc	ENSMUSG00000058076
Mpz	ENSMUSG00000056569
Pcp4l1	ENSMUSG00000038370
Nr1i3	ENSMUSG00000005677
Tomm40l	ENSMUSG00000005674
Apoa2	ENSMUSG00000005681
Fcer1g	ENSMUSG00000058715
Ndufs2	ENSMUSG00000013593
B4galt3	ENSMUSG00000052423
Ppox	ENSMUSG00000062729
Usp21	ENSMUSG00000053483
Ufc1	ENSMUSG00000062963
Rpl27	ENSMUSG00000079137
Dedd	ENSMUSG00000013973
Nit1	ENSMUSG00000013997
Pfdn2	ENSMUSG00000006412
Klhdc9	ENSMUSG00000045259
Arhgap30	ENSMUSG00000048865
Usf1	ENSMUSG00000026641
Tstd1	ENSMUSG00000091166
F11r	ENSMUSG00000038235

TF binding sites/motifs

Number: 10

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Esrra	MA0592.2	chr1:173027326-173027337	ATGACCTTGAA	-	6.62
Esrrg	MA0643.1	chr1:173027326-173027336	ATGACCTTGA	-	6.02
Nr5a2	MA0505.1	chr1:173027325-173027340	CATGACCTTGAACCT	-	6.61
RARA(var.2)	MA0730.1	chr1:173028702-173028719	TGACCACTGGGTGACCC	-	6.13
Rarb(var.2)	MA0858.1	chr1:173028702-173028719	TGACCACTGGGTGACCC	-	6.08
ZNF263	MA0528.1	chr1:173027679-173027700	CTCTCTCTCTCTCCCTTCCCC	-	6.06
ZNF263	MA0528.1	chr1:173027617-173027638	CTCTCTCTCTCTCTCTCCTCT	-	6.22
ZNF263	MA0528.1	chr1:173026529-173026550	TCTCTCTCTCTCTCTTCCCCC	-	6.3
ZNF263	MA0528.1	chr1:173027660-173027681	TTTTCTCTTTCTCCCTCCTCT	-	6.65
Zfx	MA0146.2	chr1:173027975-173027989	GGGGGCCAGGCCTG	+	6.25

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_11870

chr1:173024014-173028736

Placenta

Enhancer Sequence

GGAAAGGAAA GGACATGACT TCCATGGTTT TGGAGAAAGT TTATTTTAGA TAGAGGGAGA 60
GCATGCCCCG GAGAGCTTTG TTAGCATTTC TTCTAGGCTC CACCCAACAG TTACCTAGCA 120
ACAGCCAGGT TTGAGCCTGG CCGGCTATAA AAGGTTTGTT TAGTCACCTC CACTTTCTCT 180
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTTCCCCC GCCCCTTCTC 240
TATCCCCTTG TGCCAGGAGG CATTTGTGAA CCCCAGACCA CCAAAGAGCC ATCTCTGATA 300
TAATAGCATT AGGGTCTCTT TACTACAAGC TCAGGCTTGG ACTCTCCTCC AGCCCAACCC 360
TGACACAGCA GGATGGGGAG GGAAGGCGGA GCAGAACAAG TATTTATAGG AAAATGGGAG 420
CGAGTGAAGG GGTGAGGGGG GGGGCGGTCC AGTCTGGCAA GGCATCTAAT AGAATGACTA 480
CAAGCCAACA AGTGAGTGCT CTGAAGCAAG ACGATAAACA GTCGCAAAGG TCTGAAAGTA 540
CATCTGAAAC AATCAGACTG ATCTTTGACT AACTGTTGCT AGGAAGTAGC TAGGGAGTAA 600
CTCTGTCAAG GACAAGCCCT GAGGTCCTTT CTGCTACTTG GGTGCAACTT GGGTTCCGCT 660
GCAGGTCAAG TTCTCAGGAT TTTTTTTTTT TTTTCCTTTA AGATGGAGGT CAGTCCCAAG 720
ATGGAGTAGG TTTGGCCTCT CACTCTCTCT TTCTCTGCCT CTACTCCGTT CTCAACCCCC 780
CTTCTCTGCT GCCCCAAAAT AAACTTCATT TTATACTAGA CCCATAATAT GGCTGGTACC 840
TGGGGGGTGG GGTGGGGTTC CTCCGCATGG TATGGCACAC CCCCTCCCCA GCATCATGCC 900
ACATTAGAAA ACATATCAAG TATAGATATG CAGAAGAACA TAGTTACATA GTTACACAGA 960
ATAGTACAGC CAGGGGCAGA TATATCTGGG AAAGTCCAGA GTGGTCATGA CCTTGAACCT 1020
TGTGGAGAGA GGGGGAGAAG AGTGAGAGAG GGGAACCAGG TGTTTGGTTT TGGGAAAAGG 1080
GACTGAGCAC ATATTTTAAA TATCAAAGCA GACCTGGCCT CCAGGTTCTC CCAGCATTCC 1140
TTAGTCCCTA CCTAACAAAC CCTGTCCCCA ACCTTGAATT TTCCAGCCCT GGGGCTGGAC 1200
TGCTCTCCCC CTGCCCCCAG AGGTTCTTTC CTATATAATC CAGACATGTT GCTCTCTCTC 1260
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCCTCTTT 1320
TCTTTCTGTA CACATGCTTT TTTTCTCTTT CTCCCTCCTC TCTCTCTCTC TCCCTTCCCC 1380
ATGGTGACTT CCCTGGCTTC AGTCCCCGGG GGCAGTGAGC TCGACTTTCT GAGAGCGGTT 1440
TTCTAATAAG CTTGCAGTTA ATGTGATTAA ATTGGCTCAG TTCAACAGCA GTGGACAAAT 1500
CACCTATCAC CAAGAATGTC AGCCAGAAGA CCAGAAGTAC AAAAGGAGCA AAAGAGAGGC 1560
AGAAGGAAGG GCAGAGAGAG TAGATAAGCA ATGTCTGGAT CAGATAAGGG GAAGGACAGC 1620
CTAGCCCCTG AGACTGAAGG ATGCTGGGAA CGCCTGGGGG CCAGGCCTGC TTTGATAAGT 1680
TAAACTGACA CCTCAGCTGC TGGTCTCAGG TTTGAAACTT AACATTTTCT ATCTGTGACA 1740
GAAGTGCTTC ACTTTGCTAG TGGGATAATG TATGCCTGTT GTCCCAGCAC TCAGGAGGCT 1800
CAATTGGAAG AATCACTTGA GCTGATAAGT TCAAGACCAC CTTAGGAACC CAGCAAAATC 1860
TATCTCAAAA TACAATGCAG GTCATGATGA CACACCTCTT GAGAAACAGC ACCAAGAGCC 1920
AGCCGGAGCT ACACAGTTAG TTATTATCTT TTTAAAAAAG AAAGAAAGAA AGAAAGAAAA 1980
CCCAAACAGC AACACAAAGA AAAAGGGAAG AAAAGAGCAA GTGTAAGAAT TAAACAATGA 2040
CCTCACAAAT GCAGGCATAT GCTGTGTGTA TTCTCTACCT TAGGAACACT GAAATTGTGT 2100
AGACTCAATT CTGCAGACTA TTAGTTTTCA TAGGAAGGCA TGGAGGGGAT TAAACATTCT 2160
ACAAGGCAGA TTGACCAATT GTGGCATCAT GGTTGTAGGG AGATGGGATG TTGCAAACTC 2220
AGCCAAATTA TTTTGGGCTG TCTTTGGTCT CCTTAATAGC CATTCATTGC TCACTTCTGT 2280
ATCGGACCTT GTAAGACCCC AACTCAATGT GTTTCTTAGA CCCCTAGAAA CGAAGCCCAG 2340
CATGGAGTTC TTTGTTCTTT CGCCTGCAGC CTGAGAGAAT GATGACCACT GGGTGACCCA 2400
CCCAGGTGCC TGACCCATAG TGTAAGGGAC CAAGAATGTT TGCCAAAGAT AGCCTGTAAC 2460
CTTTCCGTGA GAGATGAGCT GTAATTCACC ATCCTCATTT TTACGATGTT TACTCAACTT 2520
CCCCATTCTT TGTGGTCTTA TCCTCCCCTC ATTTTATGGT TTATTCTTTA AAAACCCTCA 2580
ACTGCAACTG CTGGGGTCAA TCTCCTCTGC CCCATGCAGG TTATGAGCTC GGCCTCAGCA 2640
TGCTGATGTC CGAATAAACC TCATGCAATA TTGCATCAAG AACGGTTTCT CTCGAGTTAT 2700
TGGGGTATTG GCTCATCCTG GGACTTGAGG GTCTCCCCGG AAACGGGGGT CTTTCAACTT 2760
AACCTCCTTT TCACCATCAA ATCCAATTCA CAGATCACTA 2800