EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM091-20257

Organism

Mus musculus

Tissue/cell

Limb_E14.5

Coordinate

chr7:31852860-31853870

Target genes

Number: 12
Name	Ensembl ID

Gm17077	ENSMUSG00000090357
Usf2	ENSMUSG00000058239
Gm4673	ENSMUSG00000091324
Fam187b	ENSMUSG00000046826
Lsr	ENSMUSG00000001247
Fxyd5	ENSMUSG00000009687
Fxyd7	ENSMUSG00000036578
Fxyd1	ENSMUSG00000036570
Lgi4	ENSMUSG00000036560
Fxyd3	ENSMUSG00000057092
Scn1b	ENSMUSG00000019194
Gramd1a	ENSMUSG00000001248

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr7:31853049-31853060	GCCACGCCCCC	+	6.62
RREB1	MA0073.1	chr7:31853408-31853428	CCCCCCCCCACCCACCCCAC	+	6.93
RREB1	MA0073.1	chr7:31853412-31853432	CCCCCACCCACCCCACAACT	+	7.13
SP1	MA0079.4	chr7:31853046-31853061	TAAGCCACGCCCCCA	+	7.99
SP2	MA0516.2	chr7:31853045-31853062	CTAAGCCACGCCCCCAA	+	6.12
SP3	MA0746.2	chr7:31853048-31853061	AGCCACGCCCCCA	+	6.34
SP4	MA0685.1	chr7:31853046-31853063	TAAGCCACGCCCCCAAC	+	7.37
SP8	MA0747.1	chr7:31853049-31853061	GCCACGCCCCCA	+	6.11
ZNF740	MA0753.2	chr7:31853406-31853419	TCCCCCCCCCCAC	+	6.3

Enhancer Sequence

CTCCATGGTG AGGCCGGGGG CAGGCAGTGG AAGCCAGGCC TGATCCCACC AGCTGAACCC 60
TCATTTGACA GGGGGCTGGA CCACTGTTTC AGCATGTCCC CTCACTGGTG AATTCCAGGA 120
ATGGGTTCTA CCACTGAGCC TCACCCACGA CGAATCCATG CTGAATTCTG GGCAAGCAGA 180
CAGCACTAAG CCACGCCCCC AACCCCTTTC TAGTGAATTC CGGGCTTAAG CACTGCAGCT 240
GAGCCAGGCT CCCAACTCTC ACTGGTGATT CTAAGTGAGA GCTTACCTAC TAAACTACAG 300
CCCTTGGATT TATGAGGCAG AGACTCAGCT AGAATCTTAA TATATAGTCC AGGCTGGCTT 360
CAAGCCAACA TGACCTGCTC CAAGATTCTG AATTTACTCT GCTAAGCTTG GCCCTGTCTT 420
TAGAACATTC CAGGATGTTA ACTCCATCTA CACACTTCCT GTCGGGACAG GTTAAGCTAG 480
TGTTAAGACC TTCTCATCGT CTCCAGGATT ATCGTTTCAG AGTAAGGCAC AGTCAGGGAC 540
AGACCCTCCC CCCCCCCACC CACCCCACAA CTCAGTTATT CAAGGGGTCT CCAGGAGGGA 600
GCAGTGGAGA TTAGAATGGG AATCAGGGAT CACAGATACA AGAGTAGAGA AGGTGGAAGC 660
TGGGTCAGGG TGTAGCTGGA GCATATGGGA TAAACACATA ACGTATGACT GCTAAGACTG 720
ACAAACCATT GATGGGCATT CTGTGTGACC TGTGAGGCAG AGAGGAAGGT CTATAACAAT 780
GCCCCGTTCC AAGCACACAA ATGTTACCTG TAAGTTAAGA AAGTTACGGG CATAGTGTTG 840
GTGTCACAGA GGCCTGTCAT CTCAGCACCA GGGAGGCTGA GGCAGAAAGA TCAGTCAGTG 900
CCAGGCTAGC AAGGCTCTCA AAAAGGGAGA GGGGCTACGG GTAAACTGAG AACCTATAAG 960
CTCTCGTTCA CAATCCACCA GAGCATCCAG GATGACAGGC GGGCTCCAGG 1010