EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM091-12557

Organism

Mus musculus

Tissue/cell

Limb_E14.5

Coordinate

chr2:32024940-32026040

Target genes

Number: 23
Name	Ensembl ID

Lamc3	ENSMUSG00000026840
Aif1l	ENSMUSG00000001864
Nup214	ENSMUSG00000001855
Gm16534	ENSMUSG00000090157
Fam78a	ENSMUSG00000050592
Ppapdc3	ENSMUSG00000051373
Prrc2b	ENSMUSG00000039262
Gm13610	ENSMUSG00000086216
Pomt1	ENSMUSG00000039254
Uck1	ENSMUSG00000002550
Gm13611	ENSMUSG00000066068
Golga2	ENSMUSG00000002546
Swi5	ENSMUSG00000044627
Ciz1	ENSMUSG00000039205
Dnm1	ENSMUSG00000026825
1110008P14Rik	ENSMUSG00000039195
Ptges2	ENSMUSG00000026820
Naif1	ENSMUSG00000039164
Slc25a25	ENSMUSG00000026819
Dpm2	ENSMUSG00000026810
St6galnac4	ENSMUSG00000079442
St6galnac6	ENSMUSG00000026811
Cdk9	ENSMUSG00000009555

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

TFAP2B	MA0811.1	chr2:32025414-32025426	AGCCCCAGGGCA	+	6.11
TFAP2C	MA0524.2	chr2:32025414-32025426	AGCCCCAGGGCA	+	6.11

dbSUPER

Number of super-enhancer constituents: 5
ID	Coordinate	Tissue/cell

mSE_00924	chr2:32023383-32030201	Myotubes
mSE_02899	chr2:32022125-32039976	HFSCs
mSE_03019	chr2:32010930-32047319	TACs
mSE_05207	chr2:32025023-32026830	E14.5_Heart
mSE_10045	chr2:32021470-32026822	Embryonic_stem_cells

Enhancer Sequence

ACACACACAC ACACACACAC ACACACACAC ACACACGAAC ATTAAAGCTA TATCACGAGT 60
GCAAAAAGAA AACAGATGTT ATAGAAAGAA AACCGAGCAG CTGATTGTCC CTGTGTTCCT 120
GACGTGGGAG CCTTGGAACT GGGACAGTGT GGTGGTGATT AAAGTGTGCC CACAGTGGAC 180
TGCCGAGCTC AAGAGAATTT TCTGAGAATT ATAGTACACC TGTCTTTTGA AGGCTCATAC 240
AGGGGCTGGC CCACAGGTCC TGTACAATCA CAACTTGGAT CTCGTGATTT CTGAGGGTGG 300
ACAGCAGTCT GAAGACAGGT CTCCTGTGTG TGGAGGAGCA GGTCTGTTCA GCAGGAGCCC 360
CAAGGTGGGC AGAAGCTGTC TTGGGGAAGC TCAGGCCTTA CTTGCTGCAT ATAGTGGAGG 420
GATGGGAGCT GCTGAGGTTT TACTGGGCAG GCACTGGCAG TCTGGATAGA CAACAGCCCC 480
AGGGCATCTG TTCTGGGTCA TGTGTGGTAT TAATGCTCTG GGTGGCCCAG GTTGCCCCGA 540
AACTCCACAC CTTTCTGCTT CAGCCTTATT AGTATTGTAA ACCGCCACAG CCAGCTCACT 600
GTCTAGTTTC TTAACATAGA TCTAGCAAGT TCATCTCGTG TATGTGTGTG TATATGTGTG 660
TGTGTGTGTG TGTGCGCGCT TGCGCTTACT ATGTTCAGCA TGAGCCCAGT GCCCTGTGCA 720
GGCTAGGCAG GTCCTCTCAC CACTCACTCA GCTACACTCC AGGTCCCTTT TATCCTTTAA 780
TCCCTGAGGA ATCTGGCCTT AAGTCACAGC TGGTGCGGGG TTGGGACAAG CTGCAAACCC 840
AGTGTTTCGG ACATGGGACT GGGGAGAGAT GTAAGGTAGT GTTAGGGCTT GGCAGCGGGC 900
TCTGGACTGG ACAGTGGGCT GATGGGAGGC TGTGTGAGGT TAAGCTCGTT GCTGTCTGAG 960
CTGTAGCCCT GATGAAGGAA GGGGCCTGAG GACTACAAAT GGAGGTTGAT GTGTGTCAGG 1020
CCATGGAAAG GCTGTGAACT GAGTGCAAGA GAACTGAGCC TGGGAAGAAA GTGGCTTTGT 1080
TTCTTATTTT AGTTTTTGGT 1100