EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM091-10401

Organism

Mus musculus

Tissue/cell

Limb_E14.5

Coordinate

chr17:56606920-56607990

Target genes

Number: 19
Name	Ensembl ID

Sh3gl1	ENSMUSG00000003200
Dpp9	ENSMUSG00000001229
Fem1a	ENSMUSG00000043683
Plin3	ENSMUSG00000024197
Uhrf1	ENSMUSG00000001228
Ptprs	ENSMUSG00000013236
Znrf4	ENSMUSG00000044526
Safb2	ENSMUSG00000042625
Safb	ENSMUSG00000071054
2410015M20Rik	ENSMUSG00000049760
Rpl36	ENSMUSG00000057863
Lonp1	ENSMUSG00000041168
Tmem146	ENSMUSG00000040828
Ranbp3	ENSMUSG00000002372
Vmac	ENSMUSG00000054723
Ndufa11	ENSMUSG00000002379
Prr22	ENSMUSG00000090273
Mllt1	ENSMUSG00000024212
Khsrp	ENSMUSG00000007670

TF binding sites/motifs

Number: 7

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr17:56607040-56607058	CCCTCCCTCCCTCCCTCC	-	6.03
EWSR1-FLI1	MA0149.1	chr17:56607048-56607066	CCCTCCCTCCCTCTTTCC	-	6.03
RREB1	MA0073.1	chr17:56607433-56607453	CCACACACCACCATCCACCC	+	6.38
ZNF143	MA0088.2	chr17:56606956-56606972	TACCCACAATGCCCGG	+	6.15
ZNF263	MA0528.1	chr17:56607036-56607057	ATTTCCCTCCCTCCCTCCCTC	-	6.15
ZNF263	MA0528.1	chr17:56607044-56607065	CCCTCCCTCCCTCCCTCTTTC	-	6.79
ZNF263	MA0528.1	chr17:56607040-56607061	CCCTCCCTCCCTCCCTCCCTC	-	7.97

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_04531	chr17:56606833-56608581	E14.5_Brain
mSE_05920	chr17:56607090-56607783	E14.5_Limb

Enhancer Sequence

GCCCAGCTCC AGCCCTTATG GTAATGAGCA ATGAATTACC CACAATGCCC GGCCAAGCGC 60
AAGTGGCTCT TGGCCCAGAT CCTAAACTAA TTTCTACATG TTCGTGTGTG TATATAATTT 120
CCCTCCCTCC CTCCCTCCCT CTTTCCCCTC ATTATCGGGA AATACAGAGG GAGGGGGCAG 180
AAGAATCCCT GAATGGATGC GGGGGGGGGG TGCCCACCAA GCAGCCCTGG CCAGCGGGGC 240
CAGCTGGCAT GGGCCTGGGT GCAGACTGAA GGAGGTGGGA TGAGGGCAGG CCTGGAGCCA 300
GGGGAGTCTG GAAACCAACA AGCCAGATTT GGCAGCCCAG GGGGCCAGGG AGCGGTGCTG 360
TGTGTGTGCT GTGTAGCCTC TGGCCAACTC AAGCAGCCCA GAGTTCCCCA GCCAGTCTGT 420
GGGACCCAGG TGCTGTTCTG AATTCAGGCT GAGTGCTGCT CAAGGCACTT CCACTTTGCA 480
GCCTCCGCCC TGGCCTCTGA AGTGACCCCT GTCCCACACA CCACCATCCA CCCTCCCCAG 540
GAGCACCACT CAACTCCCTC GGCCTAGGGT CCTCCAGGGC TCCCACCTCC TTCTGTGAAC 600
TTGAGCTTCC CTCACTGGTG CAACTTGCCC TTCTGCTGAG CAGGCAGACT CTGGGTTCGA 660
AGCCTTGCTG TGCAGCCTCA GATAAGCCGC CTGGCCTCTC TGGGCAGCAT ACCATTATTG 720
TAGAACACCC TCCCTTTGCC ACCCCCTCCA GCTACAAGCC TGCTGGTCAC TGTCAATGGA 780
GATGGGGCCA CCTTTCTCTC GTCCTCAGGC TGGTGAACTA TTCAACCCTC AGCCCTTCAG 840
CCAGCCCCGC CTCCCCCAGG AAGCCTCTGC ACCTCCCGTC AGTTTCTCAA GCTTTCTCCT 900
GTGTCTCCAG AGGACTTTGC TGACTTGGGA AGGCACACGG ATCCTGTGAG CACAATCCTG 960
TGAGCACGGA TCCTGTCTAC ACAAACAGCA GGAAGCCGGC TTCAGGCCCC AGCTACAGGC 1020
CAGCAGCACG CTCACAACCC TCCAGAAGAA GCCTCTATAA AAGGAAGCTT 1070