EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-23473

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr9:65028000-65028580

Target genes

Number: 15
Name	Ensembl ID

Rab11a	ENSMUSG00000004771
Dennd4a	ENSMUSG00000053641
2010321M09Rik	ENSMUSG00000034263
Ptplad1	ENSMUSG00000033629
Dpp8	ENSMUSG00000032393
Igdcc4	ENSMUSG00000032816
Igdcc3	ENSMUSG00000032394
Parp16	ENSMUSG00000032392
Cilp	ENSMUSG00000042254
Clpx	ENSMUSG00000015357
Pdcd7	ENSMUSG00000041837
Rasl12	ENSMUSG00000041696
Mtfmt	ENSMUSG00000059183
Spg21	ENSMUSG00000032388
Plekho2	ENSMUSG00000050721

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr9:65028102-65028112	GCCCCGCCCC	+	6.02
RREB1	MA0073.1	chr9:65028455-65028475	TGGGGGGTGGGGGTGGGGGG	-	6.38
SP1	MA0079.4	chr9:65028099-65028114	CTAGCCCCGCCCCTC	+	6.23
SP2	MA0516.2	chr9:65028098-65028115	CCTAGCCCCGCCCCTCA	+	6.09
SP4	MA0685.1	chr9:65028099-65028116	CTAGCCCCGCCCCTCAC	+	6.1

Enhancer Sequence

TACAAGGTAT GGAGCAGCCA AACCCTTCCT GATCCTCCTC AGCATCTCTG CTGTGTGCCA 60
GAGACCAGAA CCTTCTCTCA CTCCAGCCCT AGCCCCGCCC TAGCCCCGCC CCTCACCTCT 120
GATAGGTCTC TGGCCAGGTC AAAGCCAGCA GGACTCCCCC CAGAATATGA GTATTAGCAC 180
CAGAGGGCTG TGGAGTTCTC AGACTTGCCG CCCATGATCT CAGCGGGTCA TTCCCAGGGC 240
TCACACATGT TCCTTCCTGT GGAGCCGTTT CATTCACACG TGTGCCACTT CCACGCTCAC 300
GCCCGCCTGC TGTGCGCTCC ACTGTACCTG TCATCTCCCT CTTACATGGC AGCCCCCACC 360
TTGCTCGCAG CAGCCAGCCT CAATTTCCAT TCCCAGGGCT CCACCCCATC CCTGGAGCTG 420
TCTCCTCTTG TGGCCCGGAA TGGAGATGGG AGGTTTGGGG GGTGGGGGTG GGGGGAAGAT 480
CGGGAACCTA AATACTGTTT GTTTAGCATG CTATGTGCCG TTAATCTGCC CACATGAAAG 540
TGATGGAGTA TTTCATTCTT GAGTGTTAAT AGAGGCTTGA 580