EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

TagContent
EnhancerAtlas ID
MM090-19593 
Organism
Mus musculus 
Tissue/cell
Limb_E11.5 
Coordinate
chr6:124865000-124866990 
Target genes
Number: 38             
NameEnsembl ID
C1sENSMUSG00000038521
Gm5077ENSMUSG00000079343
Lpcat3ENSMUSG00000004270
Emg1ENSMUSG00000004268
Phb2ENSMUSG00000004264
snoU89ENSMUSG00000088835
Ptpn6ENSMUSG00000004266
Grcc10ENSMUSG00000072772
Atn1ENSMUSG00000004263
Eno2ENSMUSG00000004267
Lrrc23ENSMUSG00000030125
Spsb2ENSMUSG00000038451
Tpi1ENSMUSG00000023456
Usp5ENSMUSG00000038429
Cdca3ENSMUSG00000023505
Gnb3ENSMUSG00000023439
Leprel2ENSMUSG00000023191
Gpr162ENSMUSG00000038390
Cd4ENSMUSG00000023274
Lag3ENSMUSG00000030124
PtmsENSMUSG00000030122
Mlf2ENSMUSG00000030120
Cops7aENSMUSG00000030127
Zfp384ENSMUSG00000038346
AcrbpENSMUSG00000072770
Lpar5ENSMUSG00000067714
Chd4ENSMUSG00000063870
SCARNA11ENSMUSG00000088208
Nop2ENSMUSG00000038279
Iffo1ENSMUSG00000038271
GapdhENSMUSG00000057666
Scarna10ENSMUSG00000089617
Ncapd2ENSMUSG00000038252
Mrpl51ENSMUSG00000030335
Vamp1ENSMUSG00000030337
TapbplENSMUSG00000038213
Cd27ENSMUSG00000030336
Tnfrsf1aENSMUSG00000030341
TF binding sites/motifs
Number: 5             
TFJASPAR IDCoordinateMotif SequenceStrand-Log10(p-value)
HNF4GMA0484.1chr6:124866211-124866226AGAGACCAAAGTCCA+7.31
PLAG1MA0163.1chr6:124865181-124865195TCCCCTAGGGCCCC-6.8
ZEB1MA0103.3chr6:124865645-124865656GGGCAGGTGGG-6.14
ZNF263MA0528.1chr6:124866177-124866198GATGGAGGGGTGAGGGGAAGG+6.44
ZNF740MA0753.2chr6:124866723-124866736GCGCCCCCCCCCC+6.1
Number of super-enhancer constituents: 9             
IDCoordinateTissue/cell
mSE_01504chr6:124833396-124882303Th_Cells
mSE_04216chr6:124865598-124871807Cortex
mSE_04420chr6:124865091-124871281E14.5_Brain
mSE_05599chr6:124866789-124871513E14.5_Limb
mSE_07843chr6:124865362-124869047Intestine
mSE_08291chr6:124864886-124869649Kidney
mSE_08548chr6:124862858-124869185Liver
mSE_09231chr6:124865421-124872151Lung
mSE_10954chr6:124865593-124871380Olfactory_bulb
Enhancer Sequence
TCAGGTCCTG CAAGACAGAA GGTCACCTTT CTCTCAGCAA GGATGACAGA CAGCCCTCGA 60
GTGCTTCCAA CTCTGCAGCT AGGTCAAAGG TAGTAAGTGA AGGTGGCCAT AGTTTGAGAC 120
ACAACTGGAG TCCTCCGGTC CTTAGATATG GGCCATAATT GGCTGATACT AGAGACTTCT 180
GTCCCCTAGG GCCCCCAGGG ATGTGGGCAA GTGATGATAA GTGGCCAGAG TCGCTGAGGC 240
TCCCACCCCA TCAAGTTCTT CCGAACCTCC CCTGGCTTAA GAGTTGAGCT CCACAAAGCA 300
AATCCCCCAT CTGCTGGCAG CCTGGCTGCC CCACCCCCTC ACCCTCTCTG CTTGCCCCCG 360
CTCTGCCTTT TGTCTACCTC AGGGGCCTTT GCCTAAGTAC TCTCTCTCCT GGGCATCACT 420
CCCAGCTTCT CCGTCAGCTT CTGGGGTCTT TGTTTCCCTG CTGTGTCTCC CTAATCCTCC 480
TGTTCCTACC TGGCCTAACG GCACAGGGAT GTGGCGATCA CCCTAACGTG TTCCCACATC 540
GGTTTCTATC CCCAATCTAA CCAGTCTCGG CGTTCCCTGC GCGCTCCACC TTCCTGCCGC 600
CAAGGAAGGA GGAAGCACAA CAAACAAGTG TGCGCCGGGG CGGGCGGGCA GGTGGGAGTT 660
ACCTGCCCAG AGTCCCTCCC ACCAGGCTGT CTGCCTTCAC TCCAAAAGCC CAGCAGGTCC 720
TATTCTATTC TGACAGTGGG TAAGCCCCTC TGGACACACC AGCCTTCCAA CCCCATACAG 780
ATCCCATGTC TCCTTGGCAG GGGCCACCTT CTCCTCCGCT CTTATCTAAC GTTAGTATGC 840
AACTCTGTGT ACACGATCCC AAGTGGGCCG GAGTTCTCCT AAGTAGATCA CCCCAGAGGT 900
ACGTGTCCTT TCTAGAACAA GACTGAGGTA GAAGAGGTGC CAAAATGACT GGCCTGAGGA 960
CACTCCACTC CCTTCTCCCT TCAGGAAGAG CACAAAACAC TTGGACCCTC TCACACCAGA 1020
CATGGTTCCT CATTCTGATT TGTCGTTCCT TCTCTGTCAC ATGGTGGGTT TGGGCACTTG 1080
TATTACCAGG TGGGCTTTCT CATACACTCC CGGGCCAGGC AGGAACTAAG TCAGCTTAGC 1140
ATGAGCCAGG CCCTGGCCTG AGTTTTCTAC TGCGGTTGAT GGAGGGGTGA GGGGAAGGGA 1200
GAGAGAATAC CAGAGACCAA AGTCCACAGG GTTGGCCCCT CTCCTCCTGG GTCCTGTCCT 1260
GGTCACTGTC CTTCCATGAT CTCTTGTCCA GGAGGGTATG TGACCTGCCC CCAGCTGCTA 1320
AGCAGCTCTC TGGCCTCTCC AGGGGCACAG AAGCTCACCC AGGCTAACAC CAACTCACAC 1380
ATCTGCAGGG GAGCACCCAC TCACTCTGTA GACACATGGC CCAATGTTTG GGCATTCTGG 1440
CACAGTCTCA CAGGAGCACA CTGTAGCCAC TCACAAAGCA ACAACATGCC TCCAGGACAT 1500
CTCAGTCAGT CTCCGCATGC ACACATGTAA CTGACACGGG CGGTCCCACA CACTCGCTGG 1560
ATCTCAGACA TACAAAGACG CCTACTCGGT GAAGTCACAT GCCACCGCAC AACCCACCGG 1620
AGGGCCACAC AGGCACACCT TATCAGATCT CACATGTCCC CTCTTCCCAC TGCCTTTCAT 1680
CCTATCAGCT CCCTCCTTCC ACTTGGACCT CGAGAACTAT ACTGCGCCCC CCCCCCCAAA 1740
AAAAAAAGAC TGGGCTCCCA GCCCCCAAGC CTGGCCGCAT TAATTTCCCT AAGCGGCACT 1800
CCGCAGTTTC CCTGGGGAAA TTAGAGGAAG GCTGAAAGAG AGACAAGGGC AAAGGGATGA 1860
GGCCGGGAAA GGCAGCTGCT GAGAGCAAAG ATAGCTTGAC GTATGGTCAG GCGATGCTGA 1920
GCTCCAGCTT TTTCGAAGGC TCGTTTCTCC GTCTTTCTGA TTTTTAGAAA TTCAACATGA 1980
GGGGAGGCGA 1990