EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-17944

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr5:121993990-121995170

Target genes

Number: 19
Name	Ensembl ID

Ptpn11	ENSMUSG00000043733
Rpl6	ENSMUSG00000029614
SNORA42	ENSMUSG00000064841
Gm15800	ENSMUSG00000042744
Trafd1	ENSMUSG00000042726
Naa25	ENSMUSG00000042719
Tmem116	ENSMUSG00000029452
Erp29	ENSMUSG00000029616
Adam1b	ENSMUSG00000062438
Adam1a	ENSMUSG00000072647
Mapkapk5	ENSMUSG00000029454
Aldh2	ENSMUSG00000029455
Acad12	ENSMUSG00000042647
Acad10	ENSMUSG00000029456
Brap	ENSMUSG00000029458
Atxn2	ENSMUSG00000042605
Gm16552	ENSMUSG00000089729
Fam109a	ENSMUSG00000044134
Ppp1cc	ENSMUSG00000004455

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

GFI1	MA0038.2	chr5:121994428-121994440	TAAATCACAGCA	+	6.27
Gfi1b	MA0483.1	chr5:121994429-121994440	AAATCACAGCA	+	6.62
RREB1	MA0073.1	chr5:121994474-121994494	TGTGTGTGTGTGGGGGGGGG	-	6.38
ZNF740	MA0753.2	chr5:121994483-121994496	GTGGGGGGGGGGG	-	6.92

Enhancer Sequence

TTGACACAAA ACAAAGCTGT CACTTTAAAT TTTAAAATAC TCTAAACAAA CTCTACTTTA 60
GTAGGTGGTG GTGGCGGCGG CAAACACCTT TAATCCCAGC ACTCAGGGAG GCAGAGGCAG 120
GTGGATCTTT GAATTTGAGG CCAGCCTCAA ACAGAAAATG AGTTCCAGGA CAGCCAGGGC 180
TACACAGAGA AACCCTGCCT CGAAAAAAAC AAAACAAAAC AAAACAAAAA ACAGAAAAGA 240
GTTTGTAGTT TCATGATGGC CTCTTTACTC TTTGTGGCCA AAGACAACCT TGAACTTTTT 300
ATTTCATTTT TTTTTTAATG TGTGTCTCCA AAGATGAGAG GGCAACTTGC CAGAGTTGGT 360
GCTCTCCAGC CATGTGGGTC TAAGGATCTT ACTCTGGTCA CCAGGCTTGG ACTGAGGCTC 420
CTCTTCTGAG CCAGATATTA AATCACAGCA TTGGCTGGGA TCCTCAACTA CTGATCCTCC 480
CGCGTGTGTG TGTGTGGGGG GGGGGGTGAC CCCTCCCCGT GCCAGTTTCA TGCAGTGCAA 540
GGGATCAAAC CCAAGGGTTC ATGCATGGTG AGTACTCTAC CAGCTGGCTA TATTCCCAGT 600
CCCATTTGGG GTCGTTTTAG AATACGGGGC GCTTTAAACT CTTCAGAAAT AAACTCTTGA 660
TTCTTGAGAG TAGACAAGAG AACAGAAGGA AATGAACGCA CAGAGAAGGG AAAAGCCAAA 720
GGGCAGGTTT TGGGCAAAGG TAAAGCAACT CCTGAAGTTG AAGGTCTCAA ACAGGCTTGG 780
TTCAGAGCCA TCAGGAGGGG TCAGAGCCAC TGCCAAGTGT CGCAGTGGGT CACCAAGATG 840
CAAATGGACA CAGTTGGAGG TGATGGAAAC ATGAGAGTCC TAAGAAGCCC TCTTATATCC 900
CACTCATATG AAGTATCTCC ACACTACTCA ACTTCGTTCT AGCTGAGCAC AAATTGCATC 960
AACCAAGGAG GCTAGAGGGA ATCGGAGACA CCACCCTACA CAAGCCAACA CTCTGGGCCT 1020
TCAAATGCGG TCCCCTTCCC CGGGAGGCCG AAAACCGAAC TTACTAGATG CTAGGAACTA 1080
GAACCTCTAC CTCCCATTCA AATTCTCTCT ATTTCCCAAG GCCCACGATG AGCGGAATCG 1140
CGGTTGTCGA CAAAGCAGGG TACGGGTTGC ATCTCCCGCT 1180