EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16898

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:155450590-155452700

Target genes

Number: 28
Name	Ensembl ID

Cdk11b	ENSMUSG00000029062
Ssu72	ENSMUSG00000029038
Atad3a	ENSMUSG00000029036
Mrpl20	ENSMUSG00000029066
Ccnl2	ENSMUSG00000029068
Aurkaip1	ENSMUSG00000065990
Mxra8	ENSMUSG00000029070
Dvl1	ENSMUSG00000029071
Gltpd1	ENSMUSG00000029073
Cpsf3l	ENSMUSG00000029034
Pusl1	ENSMUSG00000051557
Acap3	ENSMUSG00000029033
Ube2j2	ENSMUSG00000023286
Fam132a	ENSMUSG00000023571
B3galt6	ENSMUSG00000050796
Sdf4	ENSMUSG00000029076
Tnfrsf4	ENSMUSG00000029075
U6	ENSMUSG00000088545
Tnfrsf18	ENSMUSG00000041954
Gm16008	ENSMUSG00000087381
Ttll10	ENSMUSG00000029074
Gm13648	ENSMUSG00000086549
9430015G10Rik	ENSMUSG00000059939
Agrn	ENSMUSG00000041936
AW011738	ENSMUSG00000078349
2310042D19Rik	ENSMUSG00000078486
Plekhn1	ENSMUSG00000078485
Klhl17	ENSMUSG00000078484

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Myod1	MA0499.1	chr4:155452451-155452464	AGCAGCTGCCCCT	+	6.18
RARA(var.2)	MA0730.1	chr4:155451018-155451035	AGGTCATCAGCAGGTCA	+	6.36
Rarb(var.2)	MA0858.1	chr4:155451018-155451035	AGGTCATCAGCAGGTCA	+	6.09
Stat4	MA0518.1	chr4:155451571-155451585	CCCCTTCCCGGAAA	-	6.25

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

mSE_12994

chr4:155450213-155452753

Thymus

Enhancer Sequence

TCAGGGTTTT CAGAGAAACA GAGACTGTCA GGTTAAAAGA CCTTCCTCTG AATTGCTGTG 60
AGGTTTTCCA CATTCTATAG TTCTTGGAAA ACAAACTAGC ATACCTAAGG CCAGTGGGCT 120
ATAGGAACAG AGACCACCCT TTCTGTGCTC CAGGGAGGGC TTCTCACATG CACGCTGCAG 180
CACTTCCGTA CAAGGCCCTC AACGGCTTCC TCCTGACCTA CCTCCCTCTT TCCTTCCTAT 240
GCCTGTCTTA ATTCCTCTGC GTCCTCAGGA ATGAATAAAA TTGCTAACAT TCAGTGCCTG 300
GATGTACAGA AAGCAATTTG GGGGAGGGGG AGAGCTTCCT GTAGGAATGG GGACTAGCCT 360
GCCTGCCCAT GTTAGAGAAA ATGGAGCTGT TGAGATAAGA AAACCTTGGT AAATCCTCCA 420
ACTGGAACAG GTCATCAGCA GGTCATGAGG GCCCAAGATC TGTAGAGACC ACAGGAAAAC 480
AAAGTCTTGT CGCCTAGATT TTTGTTTTTG TTTGTGTGGC TGTCCTATTC CTTTGCCCCA 540
GGCCAGCAGG AGGCAGAAAG CCCATAAAAG AGAGTGCACC AGGAAGTGGC TCTTTAGAAT 600
CTATGCTGAG GCCGAGAGCT TTTAAGTAAT ATCACTTGGC TCAGACGTTA GAGCACATAC 660
GTGCTCTCAG TAAGGGAGGG TGTTTATGTT TGAGCACGCA TGACTATGTA TGCCTGTGTA 720
TATGTGTTTT GTGAATGTGA ACAGGAGGAG CCCAGTGGCT AACGCACAGA ACAAGAGGAC 780
TGGGGGTGCC CCCAGAAAAG GGAGCATGCC TTTCTTTTCC CTTGGGGACA GAGGAACACC 840
CACCCCCACC CCCCATCACG GCTCCTCCTT CCTCCAGGCC AGGAGCTAGT TGGGGCGACT 900
GCTACCCTTG ATGACAGGAG TATAAACCTA AGGATGTGCC ATGAAATAAG TGAAGTGGGG 960
ATAAAGCAGC TCTCCATTAA ACCCCTTCCC GGAAACCTTT CCCTCTGTCT GAGGAGTCCC 1020
CACTATCTAG CTCAGCGGTC AAGCGAACCA ACTAACGGGG AAGCTGGGAG GGCTGCAAGC 1080
CCCGGCCTCG GAAGCCACAG AAAAGGGAGG GAGCGGCCAC TATCAAAGCA CCGCCTCGTG 1140
TTCGGAAACT GCTCCTAGGG TTGGGGTGAC TTGGACGCAA CGGGTGCTTG CTTGCCTTCC 1200
AAATTCCAGG AGGGCAGCCC CTCCCTCCTG CTGGAGGTCC CTAGCTAGTG GGACCCTTCT 1260
CCACCAGGGC GGCGCGCTCT GAAGACCTGT GCACCCGGGA GGACGCTGGC CCCCGGCTAG 1320
GGCTTCCGCG GAGCCGAGGC CAGCCCAGGG CGGGCAGGGC GGTCCCAGGC GCGCACCTGG 1380
CGTTTCTGGT TTCCTCCTGT GACGATGGCT CCCAGCCAAC TCGAACTCAG AAGGGACGGA 1440
AGGAGAGTAC GCCGTCGAGC TCCCCACCCA CTGTCCGCTG CCAACCAGGA GCTGGGCGGG 1500
GCTGGAGAAG CCGGCGCAGG TGCCCGCCGC TGAATTGGGG ACACGAGCCC CCTATCCAAC 1560
CCGGCCCTGC GCCCAGCTCT TAACTGATGC GCACAGGGCG GCGGCGGGGT CCCGGCCTGG 1620
GACTGTGCGT TTCTAGTCGG TCTCCTGGCC CAAGCAGGCT CTTCCCGCGC CAGGCAGCGG 1680
GAAAGGAAGG GGTCACCGGC CAGGAGACCG CAGGAGACCG CGCCTTTGTT TGCTTGACAT 1740
CCCCACCTGT GCCCAATTAA CGCGGACAAA TGAGGGCGAA CTGGATTGTG TGAGCGCAAC 1800
CAAAAATAAG AATTGGCCCC AGGGAGTGGC TAGATCCTTC AGCCACACGG GCGCCTGGCC 1860
CAGCAGCTGC CCCTCTGCCT CACACCTTGG AGAATTTTAA GATTCAGTAC TCCAGACCCT 1920
ACTCTTCAGG CAGTTTTCTG TGTGTACCAT CCGTTCCTGC CCCCTTCCAG GCCTAGGGCC 1980
TCTTCATCCC CCATGATGGA TGTTTCCTTC CATTTTCCCC GTCCAAAGAG TGACAGGATG 2040
GACTAATTCA TAGGGAACTT GGGGCGTAGA GAATAGAGAG ATGAGGGAGA TGCACACTAC 2100
CCCGCCCCCC 2110