EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16393

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:135208600-135210380

Target genes

Number: 20
Name	Ensembl ID

Syf2	ENSMUSG00000028821
Clic4	ENSMUSG00000037242
Srrm1	ENSMUSG00000028809
A330049M08Rik	ENSMUSG00000043924
Gm15979	ENSMUSG00000087016
Rcan3	ENSMUSG00000059713
4930555I21Rik	ENSMUSG00000028801
Nipal3	ENSMUSG00000028803
Grhl3	ENSMUSG00000037188
Il28ra	ENSMUSG00000062157
Gm12989	ENSMUSG00000083678
Gm12988	ENSMUSG00000082743
Srsf10	ENSMUSG00000028676
Pnrc2	ENSMUSG00000028675
Fuca1	ENSMUSG00000028673
Hmgcl	ENSMUSG00000028672
Gale	ENSMUSG00000028671
Lypla2	ENSMUSG00000028670
1110049F12Rik	ENSMUSG00000028669
Tceb3	ENSMUSG00000028668

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EBF1	MA0154.3	chr4:135208618-135208632	AGTCCCTTGGGATT	+	6.17
EBF1	MA0154.3	chr4:135208618-135208632	AGTCCCTTGGGATT	-	7.01
ZNF263	MA0528.1	chr4:135209480-135209501	AGAGGTGGAAGGAGAAGAGAA	+	6.3

Enhancer Sequence

GGTACAGGAA GTTGATCAAG TCCCTTGGGA TTAGATGTGA GCATCAATTC AGCATGGTAA 60
ATGGTTATCC AATCATTCAT TTGTTCGAGC AAGAGTGTGA GAGTGGGGTG TGCAGAGCAT 120
GGAACCCTGT GCCTTATATT TGCAAGGACC CCCTTATCAT CAAGCCACCT CCCAGCTCGG 180
CCCTTCTTGT GTTTAGTTTT GGTTTTGGTT TTGATCAAAA TAGCGTCTCA CTAAGTTGCC 240
CAGGCTAGCA CACCTTGTCT CTACCTTCTC AGTGGATGGG ATTCCAGGCC TGTCCCACAG 300
GACCCAGCTA GTGAGTATTT AATGACTGAC TGCTGAGCGT TGCTCTGAGA CACCCACCCC 360
CTGCCCCCTT AAGACCAGCA CTCTCTCTCT CTCTCTTCAC AACCACCAAC CAATAAGGCT 420
GGTTCATTTA TGCTCGCTCA ACAGATGACA GAACCAAGAG TCAGAAGGGC GAAGTCGCTT 480
ACTTATTCAA GGTCACACCT TCAGGAAGGG TGGGGCGGGG TCTGAGCCCT TGCCCCCCAC 540
CCCACCTCCC AGGCTTCTGA CTCCCTCCCC ACCCCCACCC CGTACCTCCC ACAGAAGCCT 600
CTGGATAGCT CTTTAAGAAC CCTGTGCTAG GCCGGCTGGC ACTGAGGCTC TGGAAGCCGA 660
AATGTGTGTT TCATTAAGCT CTCAGGCTCT GGAAGCCGAG ATGTGTATTT CATTAAGCTC 720
TCAGCATAAT GTGTGCCTCC ACCCTTGAGA GATACCAAAG TGCCAGCCTC CCATGACAGC 780
AGGGGAAGCC TGGCCGTCCC AGGACTCTGG TGACTCTGGC CTGGGGCCAG CTGTCCCTGG 840
TCCCAGAGTA ACACAGCCTG ATCATGAGGG CTGAGCTGGC AGAGGTGGAA GGAGAAGAGA 900
AGTGGTGACA AGCCGTCAGG ACACGGGGGC CTGTGACAAA TGAGCGACTT TGCCTCTGGA 960
CACACACACA TGGGTTCTTG TTAGCTTTCA TGGGAAAAGG GGACCTCGGG ACCTCAAATT 1020
GTCCCTGCTT CCACCTTTCT GGCTTCTAAG ACGGTGTGAC AAGCCTCACC TGTAGAGATG 1080
GTACAGAACC ACTCCCTGCC GTTCTCCACA CACCATTTCC CATGAGATGG GAAGCACAGA 1140
CGACCTTCCA ACTCCGTCTA TGCCCATGGC AGACGTTTCT AAAAGATCAC AGAATCTTCC 1200
CTCACCCACC CAACCACCCG CCAGTCACAG CTTCAGAGAC CTGCCCAAGG TACCGTTCCG 1260
GGCAGCCACT TCCAGTAGAT CAGAGTTGAT GAGTGTTCCA ACAACCCATG ACAAGACTGG 1320
TTGAAAACAA GCATTTTTAT CGCATCTCTT GGTTTTACAG GTCAAGAATT CAGGCCAGGT 1380
CAGCTGGGCA GATCTTTGAC TCTCCCTGGC ATGGGGTAGC AAGCAGCGGT TACTGAGCGG 1440
CACTGGGCTG GCAGCAGGCT CATCTGAAGG GCTTATTGGC ACATACTCCT GGCAGTTTGG 1500
CGGGGGCTAT GAGGCTGGAT TCAGCTGGGA TTCCCCTCCA CCTGTGGTAT CCACCAGCTA 1560
AGAGTCATTT TCTCACACAG CAGCCAGTGG CTGGAGGGAT AGACAGGTAG CAGGGACCTT 1620
TCTGTCTTAG ATTCGTGGTC AAAGCAGTCA CAGGCTCGAT CCGTGCCACA ACAAAGTGGG 1680
TGCCCAGACG CCACAGCCCA TGTGTACTTT AGGTTATTTA TGTGTGTGAG CGTTTCACCC 1740
GCGTGTATGT CTGTGCACCA CTTTCATACC TGGTGCCCTC 1780