EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16268

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:131382210-131384020

Target genes

Number: 10
Name	Ensembl ID

Ptpru	ENSMUSG00000028909
Mecr	ENSMUSG00000028910
Srsf4	ENSMUSG00000028911
Gm12992	ENSMUSG00000085667
Tmem200b	ENSMUSG00000070720
Epb4.1	ENSMUSG00000028906
Ythdf2	ENSMUSG00000040025
Gmeb1	ENSMUSG00000028901
Taf12	ENSMUSG00000028899
Rcc1	ENSMUSG00000028896

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ESR1	MA0112.3	chr4:131383406-131383423	ACGGTCAGGATGACCTC	+	6.2
ZEB1	MA0103.3	chr4:131382628-131382639	GGGCAGGTGGG	-	6.14
ZNF263	MA0528.1	chr4:131382236-131382257	AGGGGAGGGGAGGGGGAAAAA	+	6.18
ZNF263	MA0528.1	chr4:131382231-131382252	TGGGGAGGGGAGGGGAGGGGG	+	6.58

Enhancer Sequence

GAGGCTCAAG CTTGATTAAC ATGGGGAGGG GAGGGGAGGG GGAAAAAAGA AAGATGTTCT 60
AGATTGCTTT GGGCAGCTTC CTAACATGAG CAAAGGTGGA GAAGTGGAAG TTGGGAAGGG 120
TGAAGGTTAA AGGGGACAAA ACTTGGGTTG TTGGCACAGG GAGGTGACAT CTGAGTTGAG 180
CCTAGGGCCA CAGAGTGAAG GGAGGAAAAA GGGAAACCCG GTTTGTCCCC AGCAAAGGGC 240
AGAGCTCAGG TTGGCTGCCA TGATGGGAAA CAGAGGCTGA GACCACTTGC TAGAAAGCCG 300
TGGATGCCAG AGTGAGGAGT TGAACCTCAC ACTGAACTGG GGAGCCGCAG GAAGTGCTGG 360
GGCAGAGAAT GCCTGGATTC TGAAGGTTCA AGCAGGTGGC TTTTCCAGAG TGCGACAAGG 420
GCAGGTGGGA ACTGGGGACC AAGCTACCAA ATGGTCTGGA GCCTGATGTC AGAAACTGGC 480
AAAAAAATAA AGGAGGACTT GGGGGACCTG AGCTATCATC CTGGATACAG TGTGCATGTG 540
AGTACACACA CACACACACA CACACACACA CACACACACA CTTTCCCCAG ACCAACTCAA 600
GTCCTGTGGC ACAGTCTAAG TTAGGCAAAG GACAGGGAGA GAAGATGGGG CCCCTCTTTG 660
GGTACCTCAT CTCTGCGGAG AGCTCTCGCG GAGGGTGGGT TGAATCAATA CAGGACCCCA 720
GAGCTCCTCC AGCCCAGGCT CCAACTTGCT CAGCAACATT CCTCTGCTAA TCTCCCCAAT 780
CTGGCCAGGC GGTTGCCTGA GCAACCGTCA ACCACAATTT GGGAAGAAAG GGGATGGCTT 840
ATGCACATCC GGCAGGCTGG AGGGAGGATG ATGTCAGGGA CCAGCAACCT CTAGAGAAGC 900
CTGGGAGGGG TTCCCCCAGG GAGGTCTCAC CTCTCTCTCT CTCTCTCTCT CTGTCTCTCT 960
CTCTCTCTGT ATGTGTGTGT GTGTGAGAGA GAGAGAATGA GAGAGAGAGA GAGAGAGAGA 1020
GACAGACAGA GAGACAGAGA GAGAGACAAA GAGAGAGAGA CAGAGAGAGA CCTAGCTGTG 1080
ACCATGACAG GACAACTGGT ACAAAACATT TAACTAAGAT CAGAGAATCT GCATCTTAGT 1140
TCTGCTAAGT TCCTGGGTCC CTTCATGACT TAGCATGTGA CCTGCCTTCT CTGACCACGG 1200
TCAGGATGAC CTCTTAGACT AACAGATGCT AACCAGGATG ACCTCTTAGG CAGCATGACC 1260
CCTTCTCACT GATCTCTGGA CAACCTCATC CCTGGGTCTC TAGGCCAGGC CCCATTCAGG 1320
ACCTCAGTGA AATAGGAACA GGGGTTATGC CTCTGATTTT GGTTGCATGG TGGTGTACCC 1380
CTCTGATCCC AGGATCAGGA TGGAGGAGTA GGCATAAGAA TCAGGAGTTG GGGGTCGTCC 1440
TCAGCACCAT AAAGGTGTTC CAGGCCAGGC TGGGCTCCAT GAGAGCCTGT CTCAAACAAG 1500
CCAACAGTAA TAGTAATAGC AATAGCACCA ACTGGAGGTG TCCTGGGGGA AAGGTATGCA 1560
TAGGAGGGCA TGGGTGACTG CCAGATTAGG GCTCTCAGAA ATACTGTAAA GCTGGCTTGT 1620
GAGCAGAAAT ATATAGATAC ATTCTATGCT GGGCATCAGC CTGGGGATGG TGGGTATTTG 1680
TATAGAGCAG AAAGAGTTGG CGTGGAGGGG GGGGGGTGAA CACTCGTGTG TGTGTGTGTG 1740
TGTGTGTGTG TGTGTGTATG TGTGTGTGTG TATGTGTGTG TGTGTGTGTG TGCGCGCGCG 1800
TGCACACACA 1810