EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16236

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:129683700-129683990

Target genes

Number: 25
Name	Ensembl ID

Marcksl1	ENSMUSG00000047945
Hdac1	ENSMUSG00000028800
Lck	ENSMUSG00000000409
Fam167b	ENSMUSG00000050493
Eif3i	ENSMUSG00000028798
2510006D16Rik	ENSMUSG00000028797
Iqcc	ENSMUSG00000040795
Ccdc28b	ENSMUSG00000028795
Txlna	ENSMUSG00000053841
Kpna6	ENSMUSG00000003731
Tmem39b	ENSMUSG00000053730
Khdrbs1	ENSMUSG00000028790
Ptp4a2	ENSMUSG00000028788
Gm10571	ENSMUSG00000073753
Gm12966	ENSMUSG00000070729
Bai2	ENSMUSG00000028782
Gm12963	ENSMUSG00000085517
Col16a1	ENSMUSG00000040690
Pef1	ENSMUSG00000028779
Tinagl1	ENSMUSG00000028776
Serinc2	ENSMUSG00000023232
Fabp3	ENSMUSG00000028773
Zcchc17	ENSMUSG00000028772
Snrnp40	ENSMUSG00000074088
Pum1	ENSMUSG00000028580

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

HOXC11

MA0651.1

chr4:129683891-129683902

GGTCGTAAAAT

6.62

Enhancer Sequence

TCCTGGGTTT TCCTGTGCCC CTCAGGAAAA GAAGACCATG GCTCCTCAGG CTGGTCCTGG 60
TCACCTTATC TGGGTGTCCA CAAAACCTGT CCTGTATGAT TTGGGACCAC ATCCCCACAA 120
AGGGTGGCTA TCCTGGGACC CTAAACCTTC TTGCCCTGGC AACAGAATCC AGGGCGGAGC 180
CAATAAGGAG TGGTCGTAAA ATTGCGGAAC TCCTGATTGG TGGGCGGATG GGTAGGCGCT 240
GGCTGTGGGC GGAGCCAAGG TGCCGCCCAG CCACCGGCCA CGTGCTTCCT 290