EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16202

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:128914870-128916240

Target genes

Number: 30
Name	Ensembl ID

Phc2	ENSMUSG00000028796
Zfp362	ENSMUSG00000028799
Adc	ENSMUSG00000028789
Ak2	ENSMUSG00000028792
1700086P04Rik	ENSMUSG00000085085
Rnf19b	ENSMUSG00000028793
Tmem54	ENSMUSG00000028786
Hpca	ENSMUSG00000028785
Fndc5	ENSMUSG00000001334
S100pbp	ENSMUSG00000040928
Yars	ENSMUSG00000028811
C77080	ENSMUSG00000050390
Gm12976	ENSMUSG00000087575
Sync	ENSMUSG00000001333
Rbbp4	ENSMUSG00000057236
Zbtb8os	ENSMUSG00000057572
Zbtb8a	ENSMUSG00000028807
Zbtb8b	ENSMUSG00000048485
Bsdc1	ENSMUSG00000040859
Marcksl1	ENSMUSG00000047945
Hdac1	ENSMUSG00000028800
Lck	ENSMUSG00000000409
Fam167b	ENSMUSG00000050493
Eif3i	ENSMUSG00000028798
2510006D16Rik	ENSMUSG00000028797
Iqcc	ENSMUSG00000040795
Ccdc28b	ENSMUSG00000028795
Txlna	ENSMUSG00000053841
Tmem39b	ENSMUSG00000053730
Ptp4a2	ENSMUSG00000028788

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr4:128916230-128916240	GCCCCGCCCC	+	6.02
Sox3	MA0514.1	chr4:128915699-128915709	CCTTTGTTTT	+	6.02

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_07184	chr4:128911204-128915562	Intestine
mSE_08207	chr4:128912492-128916386	Kidney

Enhancer Sequence

CTCTGTGGGT CCCGGGTCAA CCGTGCTGAG GTCTCCTCCT TTCAGACAGG CCCAGTGTAG 60
GAGCCATGGA GGTCCAGGAA ACCAAAAATA AATAAATAAA TAAATAAACC TGACCAAGGT 120
CACCAGTGCC TCTGGCAGTG GCACTAAGCA CAGACCCCTC TTCTCTCTCT CCTGGCTTCC 180
CATCACCCTT ATGTGGGGAG CGGGGAGAAA AATGAGATCA TCAGACTCCC AGTTCTCCAA 240
AAATGTGGGC CATCCTGAGA ACAGAGGCGG ATTTTCCCAC AAGGGCCCCC CACCATCCCA 300
CTTCCTCCTG GATTCTCTCC TTAACCCAGA CCTGCAGGCA CCATACTTAG AAGACCTGCC 360
TCGGTTGGAG CCCCCGTTTT TGGTGGGGTG CCGTTTTAAA TCCACCTTCC CCCTCCCCAG 420
TCTCTGCATT TACAAGGTGA GACAACCAGG CCCTCCCTCC AGAACCCCTT GGGACTCTCT 480
GGGATACCCA GAACTGTCGC ACTGACAAGG GAACACCAGG AACGCCATCT CAGCCTTGGG 540
ATTGGAGGCC TTCCTCATTC CCTAGCCCCC ACCCTTGGAG ACTGGAATGT GACCCGCGGA 600
GGGATCCCGC AGCACGCCGG GAAGGGCTGC AACAACGTTC CAGCCCGCTG GCTGCATTGA 660
ATGGGGGAAG ATGGAGCGGC CACCTCGGAA ACTGCGGGGG TCTGGGGGGG GTGCGAGAGA 720
AGGTGCAGCG GTGCAGTGGG GGTGGGTTCA AGGAAACAGT TGGACTCTGG CTCGCGCACG 780
GGGGTAGGTC CCCAGCCTTC AGCTCTGGTT TCCTGCTTCT TTCCCCCTAC CTTTGTTTTC 840
CCTCCCTCCT GCAAACTTTC AGACTGTTGG GGGTAAAGGT TTGGAGAACA AGTGTGTGTG 900
TGTTGTGTAT GCACATCCAT GTGTGCTGTA CACAGCGCCT TAGAATCTGC CCTGTGTGTA 960
CAGCTGGGTG CCTAAGACAC TGGACAACTG TACCTACATG ACTCATATGT GTGCCTGTTT 1020
GTCAACCTAG GCGTGGGTGT AGCTCATGTG GCCATGTAAA CCGTATGCAC AGGTATATGT 1080
ACCTGTGCCT CCGGATGTGT GTCCCGGTGC CAGTGTGTGG GTGTGACTGT GTATGCGGGT 1140
TTTGGTCTCT GCACTGACAT ACATAAGAAT GGGTGTTGTG TGCAAGATGT GAAAATGTAC 1200
GCGTGCCCGC CCGCGGGTAT GAGTGGGTAC GTGTGTGTCC ATGCGCATGT GAGGGGTGGG 1260
ATCTGAGCGG ATTCCCGGCC CCCCACTCTC ACGCCCACCA GGCCCCGGGA GGAGGACTGC 1320
GCAGCACGGG CAGCGACTGC AGGGACCCTC CTCCCCGCCT GCCCCGCCCC 1370