EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16199

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:128865740-128866610

Target genes

Number: 30
Name	Ensembl ID

Phc2	ENSMUSG00000028796
Zfp362	ENSMUSG00000028799
Trim62	ENSMUSG00000041000
Adc	ENSMUSG00000028789
Ak2	ENSMUSG00000028792
1700086P04Rik	ENSMUSG00000085085
Rnf19b	ENSMUSG00000028793
Tmem54	ENSMUSG00000028786
Fndc5	ENSMUSG00000001334
S100pbp	ENSMUSG00000040928
Yars	ENSMUSG00000028811
C77080	ENSMUSG00000050390
Gm12976	ENSMUSG00000087575
Sync	ENSMUSG00000001333
Rbbp4	ENSMUSG00000057236
Zbtb8os	ENSMUSG00000057572
Zbtb8a	ENSMUSG00000028807
Zbtb8b	ENSMUSG00000048485
Bsdc1	ENSMUSG00000040859
Marcksl1	ENSMUSG00000047945
Hdac1	ENSMUSG00000028800
Lck	ENSMUSG00000000409
Fam167b	ENSMUSG00000050493
Eif3i	ENSMUSG00000028798
2510006D16Rik	ENSMUSG00000028797
Iqcc	ENSMUSG00000040795
Ccdc28b	ENSMUSG00000028795
Txlna	ENSMUSG00000053841
Tmem39b	ENSMUSG00000053730
Khdrbs1	ENSMUSG00000028790

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

SCRT1	MA0743.1	chr4:128865896-128865911	AAGCAACAGGTTTCT	+	6.24
SCRT2	MA0744.1	chr4:128865896-128865909	AAGCAACAGGTTT	+	6.03
ZNF740	MA0753.2	chr4:128865961-128865974	GTGGGGGGGGGAG	-	6.52

Enhancer Sequence

TATCTGAAAG AATTTGCAAC TCCCTCTGGG CTAACTGCAA ACAAGGTAAA ATGGAAAGAT 60
AACCGGTCTG GAAATCTCTG CTTTAGGTAA CAATTCCCCC AGACTAGGGA GCCAAGAATT 120
CCCACACAGG CCCAGGCAGC AGATTTTTCT AAACTGAAGC AACAGGTTTC TTTTACAAGA 180
ATAGTCTATT AAAGCCTGGG GCTCTTAACA ACCACGGGGG GGTGGGGGGG GGAGGACAAA 240
AAACAAAAAA TGAGGGCAGC CGGTGAACTC CGTCCTCATT TGGTGGCCCT CTGAAGAAGG 300
GCTCACCTTA GGTGTCTGCA GCATTCCCTG CGGCCCTGGA TGAAACCCAG CAACGGTGGC 360
CCAGGGATAC CTTGCGAGGA TGCCCGCGGG CCTCCCCGTC GGGAACACTA CCCGCCCGCC 420
CGCCGCGCCC AGGGCCTCTG CACTTCCCTC CTCCTCCCAC TCGGGAGAGC GAGTCCTCGC 480
CTCCCCGCGG ATAGCGGGAG GAGCGCGTGT TCCCTCCGCG CCCCTCCCCC CAGGGGCGAC 540
CCAGGTCCCC CCGCGGGCTC CGCCAGGGCA CCCGACCTCA GGGGACAGAC GCTGACTGCC 600
ACATCTCGGC AGGCTGCGGC CCGCGGTCGC CCGGAGTGGG TCGCCCTCTC CCGCCACGAC 660
GCCCCGCGGG AAGCCCGCCA TCCCCGCTCT CCCTAGCAAC AGCCTCCCGC GGGGAAGGCA 720
GGCACCGGGA GAGGAAGACC CCCCCCCCCG CCCCCACTGG CAGGGCCGGC GGCCCGAGGA 780
CCTGACAGCT CCCTTTTCCT CAGCGGGATG AGGGGCGTCA CTCGCCCACG GATGTGGAGG 840
TGGGGGGCAG GGACAACCTC CCCGCCCGCC 870