EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16030

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:117729800-117733270

Target genes

Number: 19
Name	Ensembl ID

Rnf220	ENSMUSG00000028677
Eri3	ENSMUSG00000033423
Slc6a9	ENSMUSG00000028542
B4galt2	ENSMUSG00000028541
Gm12841	ENSMUSG00000085278
Atp6v0b	ENSMUSG00000033379
Dph2	ENSMUSG00000028540
Ipo13	ENSMUSG00000033365
Artn	ENSMUSG00000028539
9530034E10Rik	ENSMUSG00000086554
St3gal3	ENSMUSG00000028538
Kdm4a	ENSMUSG00000033326
Ptprf	ENSMUSG00000033295
Hyi	ENSMUSG00000006395
Szt2	ENSMUSG00000033253
Med8	ENSMUSG00000006392
Elovl1	ENSMUSG00000006390
Cdc20	ENSMUSG00000006398
Ebna1bp2	ENSMUSG00000028729

TF binding sites/motifs

Number: 12

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

EWSR1-FLI1	MA0149.1	chr4:117730287-117730305	TTCTTCTTCCTTCCTTCC	-	6.41
Foxd3	MA0041.1	chr4:117732262-117732274	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr4:117732266-117732278	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr4:117732270-117732282	AAACAAACAAAC	-	6.32
Myod1	MA0499.1	chr4:117730865-117730878	TCCAGCTGTTCCT	+	6.09
TFAP2A	MA0003.3	chr4:117731741-117731752	TGCCTGAGGCT	-	6.32
TFAP2B(var.2)	MA0812.1	chr4:117731741-117731752	TGCCTGAGGCT	-	6.62
TFAP2C(var.2)	MA0814.1	chr4:117731741-117731752	TGCCTGAGGCT	-	6.62
ZNF263	MA0528.1	chr4:117730279-117730300	CTCTTCTTTTCTTCTTCCTTC	-	6.47
ZNF263	MA0528.1	chr4:117730088-117730109	GGAGGAAGGGGAGAAGAAAAA	+	7.08
ZNF263	MA0528.1	chr4:117730082-117730103	AGGGGAGGAGGAAGGGGAGAA	+	7.55
ZNF263	MA0528.1	chr4:117730085-117730106	GGAGGAGGAAGGGGAGAAGAA	+	9.38

Enhancer Sequence

CTAAAGAGCA GTAATTGCTG GTAGTGGCTG CCTTTGGTGG CAAGACTCTA CAAAATGTCC 60
ACAGTGAACA TGTGTTATTT GCATCAAGTG GGTGGGGGTG GGGCCGGGTA CTGGCGCTCA 120
CTGGAGTCCC AGCTATTTGA GCTGAGGTGG GAGAGTTTTA CTTGGGACCA GAAATGAGTG 180
TGTGTGTGTG TGTGTGTGTG TGTGTATGTG TGTGTGTGTG TGTGTGAGAG AGAGAGAGAG 240
AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAGTGGGGTG AGAGGGGAGG AGGAAGGGGA 300
GAAGAAAAAG ATTAAAAATA ACTGCTCCAG CGCACACTGG CTGGTATTGG AGCCAAGGCA 360
CGGCAGGTTC CAGATCTCTT CCATTGTTTG TGGTGAGGGT TGTTCGGCTT TTCAGTTACT 420
GGGGCCATCC TGAGAGCTCA GAGCAGTTAC ATCAACTCCT GGACAACCCA ATTTCACTTC 480
TCTTCTTTTC TTCTTCCTTC CTTCCCACAG TTTGTTCCTC GGTCCCAGGG ATGGAGCCCA 540
GGGCTTTGCA CAGGCTAGGC AGCATTCCCT CATCAGCTCT AGGCCCCTTG CCGCAAGCAT 600
TACCAAGCAC CAATGCTCAG TAAGAGAGGT CTCTGCCTCG CAGGCCAGGA AGACGGACAA 660
GGTACAGGTA AAGAGTGATC GATGAGGGTC TTGGGAGGGA AGCCTGGAGG GGAAGGTCGC 720
CGTCTCCTGG GAAGCTGAGT CTCTGCAATG GTCGCTGTGC TCAGGGAGCA TGCGTTTTCA 780
GAGTTGAGAT GTCATGAACA GGGGGTGAGT GACATATTCA TGCTCTGTGT AAGTTCAAAT 840
AAATTTTGTT TTCAGTCTTA AAGGCATAGA CCAGTTTGGT GATTCATTAT TTGTGTTTAT 900
TCTAAAGGAT GTAAGATTAT TTTAGTTATA AACCATGATG ACAGCTTACG GGAAAACTTA 960
GCATTCAACA AAAAGAGACG TTTGCTTTGC AAGCAACAGA GCAAGAATCC AGATTTCTCC 1020
CTCTGAAGCT AACAAATAAG TCATTTTTAC TTGAGCGTTC CAGGCTCCAG CTGTTCCTGG 1080
CTCCTAGGCC AGAGGCGGGC GGCCATGTGG TGTGTTGCAC AAATGACCAA ACAGAATCCC 1140
AGACCAAAGC ATGACAGAGC TCGCTGCACA ATGAGGAAAG CTAGAATTTA CTGGAAGCTT 1200
TTTATTACGG TCAGATGTTT CCTGTGTCTG GTTTCTGAAG CAGAATGTGG AGACTACGGA 1260
GGGGTAGGGA AGAGAATGCA GCCCATAGTC TTAGGTTTTG CCCAGGCTTT GAAAGCCCCA 1320
GGCATGTGTG AATGAGCTGC ACTCTGGGGT GCCGCCTGCC TGCTACCCTA TATGTTCCAC 1380
ATCTAGATCT TCTGCTATCC ACCCCGTGCG AGCTTCAGGA GTGGGAGAAT GAGGAGCAAA 1440
CAGACTGTTC CCAAGCAAAC AGGTAGAATT CAAACACGTA AACTAACATG TCCCTGTGAT 1500
AAGACAGAAA AAAAGAGAGA TTCCGCTGCT CCTTAATACA GAAAATACTA TATCCTGCAC 1560
ACCACAGTAA CAACAACAGA GACACGCAGA GTAAGAACGT GAGTGTTCCT GTCCTCAAGA 1620
AAGTCACGTT AGTGGGCGAG GGGTGAAATG CCAAGTATGT AAAATGAAGG AAGCCATTTC 1680
TCACAGGGGT GGTTGATTGA TATGACACAA CGTTAAAAGG CCAAGGGGGA GGAGGAAGAA 1740
CAGACATGAC CCATGGCGTG TTAGGGCATG GGGACGGTGA CCTGAAGACA GGAGCCATCA 1800
GAAGCAAAGG CTAGAAGGGA GTTCTCGGCT GAGGGAGGGC ACGCCCCAGA ACCTCCTGCA 1860
CTTAGGGTCA GAGTGGGCCT GACTGCTGCA GTGGAGAAAG CAGGAAGGTG GGAAGTGTTC 1920
TAAGAAAGAA CCGGCCACAT CTGCCTGAGG CTGTGGAGAG ACGGCTATGT CCTGCGCCAC 1980
AGCAGAATTT TTCTATTTAA AAACAATTTT CATGTGTTCG AGTATTTTTA AGATTTATTT 2040
ATTTTTATTT AATGTATGAA TGTTTTCCTT CCATGAGCAC CACGTGAGTT CCTGTTCCCC 2100
AGGGATGCCA GGAGAAGGTA ACAGATCCCT TGGAACTGGA TATAGCCGGT TGGTTGTGAG 2160
GCAACACGTG GGAGCTAGGA ACTGAACCTG GGTCCTCTGA AAGAGCAGCA AGTGCTCTAA 2220
CTACTGAGCC ATCTCTTCAG CCCATGTATG GGTGTCTTGC TTGAGTACAA GTCTGTGCAC 2280
CACTTGTGTG CCTGGTACCC ACGGAGGCCA GAAAAGACAG TTGGGTCTCC TGGGATTGAG 2340
AGTCGCAGAT GTTTATAAGC TGACACATGG GTGCAGGGAA TCAAAGCCAG ATCCTCTAGC 2400
AAAGCAGTCA GTGCTCTTAA CCACTGAGAC AACTCTCCAG GCCCCACGAA GCCTTTAAAG 2460
ACAAACAAAC AAACAAACAA ACTAACAGTG GCCTCAGCAG GACAGAGGGG AGTGTGCCAG 2520
TCACAGAGTG CCTGCTACCA TACATCAAAA ACAACAAACA GAAACTTGCA AAAATAGGGC 2580
AGTAAAGGGT TCCAGCTCGT GTTCTCAAAT AGAAACTTGG CTTCAGGATT TGCAACGAAC 2640
AGAACAGGAA TGAGAAATGA GACATACAGA AGACCATATC CACAGTTCAG GCTTGTGCAA 2700
ACTCAGGCTG ACTTCTCTGA GTAAGAGTGG CCTACTGATG GACCACTGAG GTGGCCTGAT 2760
CAACAGGAAG GTCAAGCCAT TCCCTGGGGG CTGCCTTCTG GAGACATGCA CTGGGAAGGA 2820
AGCACAGAGT ATTGGGGCGC TAGGAGCAAT CACAGCATAG AAGGGAGACA AGGGCGGGGC 2880
CTAGGCCAGG CTAGATGCTT GGTCCTGCAG ATCACATGGT AAAACATTAC AGTGAAGAGT 2940
CAGAGCCTGC TGTTGAGAGC ATTGCAGAGA AGCTCGACCT TCAAAACGTC CTCCTGCTTC 3000
CTCTGTGGTG ACCAGCTATG ACTCGGGGCA TCCCTCCTCA AGGCCTTAGT GTTTTGGCTT 3060
TGCTCAGTTT CCATGAGGCC TGACCAACCC CTAGGAGTCT CCTCTTTCTG CCTCCTGCTA 3120
CCTGGATGCA TTCTGCATTT GCAGGGAGCT CGTCCCCTCT GGCAGCTCGC TTCCTGCCCC 3180
CTTCCCCGCC CTCCTAACGA CTGGTATAAA AGCATGCTTG TCACCCGGGA CAACACATTC 3240
ACAGGCTGAC TCAAAAGCAG AGGACAAGTT AGATTATGGG TCTAAGCTGT AGTCACCAAT 3300
CTGGCTTTAC AAAGAGCCTT CAACTTGGCT GGGAGTGGGG GTGGTGCTGG TGATCTATTA 3360
AGAGAAATGA TAATTTATTT TTCTTACTGT TATTTACTTG TTTATTTTTT GAGACAGGGT 3420
TTCACGTATC CCAGGCTGGC TTTGAATTAA GTATGTATTA GAGGATGACC 3470