EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-16000

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:117081580-117082970

Target genes

Number: 22
Name	Ensembl ID

Toe1	ENSMUSG00000028688
Urod	ENSMUSG00000028684
Eif2b3	ENSMUSG00000028683
Ptch2	ENSMUSG00000028681
Btbd19	ENSMUSG00000073771
Plk3	ENSMUSG00000028680
Gm13015	ENSMUSG00000070834
Rps8	ENSMUSG00000047675
Kif2c	ENSMUSG00000028678
1700012C08Rik	ENSMUSG00000086482
Tmem53	ENSMUSG00000048772
Gm12843	ENSMUSG00000085749
Gm12828	ENSMUSG00000086876
Gm12827	ENSMUSG00000087228
Rnf220	ENSMUSG00000028677
Gm12826	ENSMUSG00000083446
Eri3	ENSMUSG00000033423
Dmap1	ENSMUSG00000009640
Gm12840	ENSMUSG00000086320
Gm12844	ENSMUSG00000084260
B4galt2	ENSMUSG00000028541
Atp6v0b	ENSMUSG00000033379

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

GATA2	MA0036.3	chr4:117081730-117081741	AAAGATAAGAA	-	6.62
RREB1	MA0073.1	chr4:117081985-117082005	CCCCCCACCACCACCACAGC	+	7.31
ZNF263	MA0528.1	chr4:117082286-117082307	GGAGAAAAAAGAGAAGGGGGA	+	6.03
ZNF740	MA0753.2	chr4:117082311-117082324	GTGGGGGGGGGGC	-	6.29

Enhancer Sequence

ACTGATTGCC ATTTTACTTC ATGTTTCGAG TGGAACTTAC GACAAAGGTC TTGAGGGCCT 60
TTCCAGGCCA AGTCTCAGCC TGAGCAGCAC TTCTTCTCCA AAAATGCTTC CATGGTCCGA 120
GGCACTCAGC CCAAGAGTGG ATTTTCCCAA AAAGATAAGA AAATCAGGAG AGGAAAGGGG 180
ATAGCTACTA AATCGAGGCC CTCACTGGTC TGCGGTAGAG GCTTGGCCAT CTGCTGACCC 240
CATGTAACTT GCCCATCACC CATCGTTCCT GTGGTGAGCA CCTGGGGGTG GTAGTGTACA 300
GAGTCAATGA CTTCCCATAC CGGACCTTAG CCAAGAGGAC CAAGGGTTTC CTGGACTCTC 360
TACCAGGAAA GGGTCCCCTA CCCAGACTAA GGAACCATTT CACACCCCCC CACCACCACC 420
ACAGCCCAGT CTAAGGAAAG AAAGGTCATT CCCTCCCCCT CCTCTCCACA GCAGCTTTTC 480
AAAGGTTAAA TTCAACCAGC CCACCCCACC CCCTTCACGC CCACCCCCAA ACAAGAGAGG 540
AAAAGTTAAT TGAAAACGCT GTTTAATTTT TCAGCTCCAG TGGATCCTGC CCCAGCACAG 600
ATGGCTCCCC CAGGACTGTC TGCCCCTAGC CCATCTCTAC CACTCCACAC GCCCCCCTAC 660
CCCCATCAAG CATGGGGGCT GAGGCACCGT CAGCAGTGGC TCAAAGGGAG AAAAAAGAGA 720
AGGGGGACCA TGTGGGGGGG GGGCACCTCA CACAAAAGAG CATTCTGAGC CCTTGGTTCC 780
CTGGCCCAGA GAACAATGCT CAGACTTGAT CCTTTCATAA AGAGAGTTTC TGGTGTCAGG 840
AGACAGCCGC CCAGCGCCCA AGCCGCCCAC CCTGGCCACT TCACTGCCCA CCACCAACTG 900
CTGTGCTGGC TGGGTTTCAT TCCGCACCCC CCTCTGTGTC CAGCTGGAAG TGAGCGCGGT 960
ACCAGCCCCC ACCCACTCCA AGCCTGCTTG CTACTTGTTG CCCCCTAAAG GCTCTGACAG 1020
GGCCCCAGAG AGGCCAGCCA GCTGAGATGA AAGGCTAGGA CTCTAACTGG ATTACCCCGA 1080
CCAGCCCCTG GACTAAAGAG GCCAAGAAGC CCTAATTAAA GCCATCCCCC CTTTCCCCTG 1140
TGCACCCCAC CCCAAACATG GCAGCCTTTC TCCTTTCATC CCAGGTTCTC CAGTTTGTTC 1200
AAATTTCCGC TATTGATGGC TCACTAGGCT CTGAAGAGGT AGGTAAGTGG GGAGACACAG 1260
AAATCTATAG CTTTGAGCCC TTGGCTGTCA AGTTGCCTGG ACTTTGTTGT CTCCTCTGTC 1320
ATAGCCAAGA GGAAGAAACG TAGAGGGAGA CATGAAGTAA GCAGGAAGGA AGAGGATGTG 1380
ACTGGAGGTC 1390