EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-15967

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr4:115570350-115571600

Target genes

Number: 19
Name	Ensembl ID

Gm12839	ENSMUSG00000083457
4732418C07Rik	ENSMUSG00000034210
4930544O15Rik	ENSMUSG00000044556
Atpaf1	ENSMUSG00000028710
Gm12847	ENSMUSG00000085249
Mob3c	ENSMUSG00000028709
Mknk1	ENSMUSG00000028708
Kncn	ENSMUSG00000073774
6430628N08Rik	ENSMUSG00000034185
Dmbx1	ENSMUSG00000028707
Faah	ENSMUSG00000034171
Nsun4	ENSMUSG00000028706
Gm12854	ENSMUSG00000078238
Uqcrh	ENSMUSG00000063882
Lrrc41	ENSMUSG00000028703
Rad54l	ENSMUSG00000028702
Pomgnt1	ENSMUSG00000028700
1520402A15Rik	ENSMUSG00000028701
Pik3r3	ENSMUSG00000028698

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF4	MA0039.3	chr4:115570591-115570602	GCAGGGTGTGG	-	6.62
ZNF263	MA0528.1	chr4:115571326-115571347	TACTTCACCCTCCCCTCCTCC	-	6.48
ZNF263	MA0528.1	chr4:115571329-115571350	TTCACCCTCCCCTCCTCCTTC	-	7.54
Zfx	MA0146.2	chr4:115571031-115571045	CCGGCCCCGGCCTC	+	6.14

Enhancer Sequence

ACAGGTGGGG GAAACAATTT GCAGATTCTT CCCATTGGAT GGGTTGCTTC CCAGGGCTGT 60
TAAAGATGTC CTGGGCAACT TGCTGACACT GCAGGCAGCC ACAGAACTGA GCCCAGATTG 120
GAGGTTACTG AAGCTCCTTC CCTTCTCACT CACTCTCTTA CTGTGTGCCA GCAGGATCAC 180
CAGAGCTTGC CCCTGACATG TGTGCCACTC TGGTCAGGCA GCGGGACAGA GCTTGACCCG 240
TGCAGGGTGT GGGCGGGCCG ATGCCGCAAG CAAAGAAGAG CACAGAGACC CTGGCCCCAG 300
CGCCCCCGGG CCGTTCCCGA AGCCTTCTGC GTAGCCTGCC GTCGCCCGCT CTATGCTGTG 360
CCTGTGGCTT GTGCGTGCTG CTGGCAGGCC TGAACGTGAC ACTGGTGGGA GCTTTCGCCG 420
CCTTCTTGCC GGGACACAAC GTGCCTCTGG TGGTGGGGCC CGCTCTGCTC GTGCTGGCGC 480
TCGGCTTCTT TGCTGCCTGC TGCGTGTGCA GCCGCCGGGG CCCCGTGCCC CGCGCGCGCT 540
CCTCTGCCAC CGCGGGTCAG GGTGGCGGGC GTCCAGGGAC TGTGGCACTG GAGATGGAGA 600
GCAGCGAGCG CACGGCACAG GACACCACGG CGGTGCAGCT CAGTCCAGCA GCTTCTGCTG 660
CATCCTCCGG CCGCTCCAGC CCCGGCCCCG GCCTCTTTGC CCTGGACCCT CCCGCACCGG 720
CAACCGCGGC CCCCTACTTG CCGCGCACCG AAGGGACGCA GCTTAACTTC CCTCGGGACC 780
CGGCTGCCTC CTAGTGGGCC ACGAGGAGCG GGGAGGGGAG GCTGCTGTAG GGGAGAGGGA 840
AGGCCCAGGA CTGAGCACAA ATGGCCTCAT CTGTACCATC TCTAGAACTT CCAATAGGGA 900
GAGTGTACTG ATGGGATTGG CTTTCACACC CCAAAGAGAG CAGAGCTTTG ACCCCTTAGG 960
TGGAGTCTCT AAACTCTACT TCACCCTCCC CTCCTCCTTC CCACGTTGAT TAGACTGGAC 1020
CCTGGATCTG GAAATCTGAC CCTCCCTGTG GCATTTGAGC TTTATGGAGG GAACTTCATT 1080
CAATCTAGAG GATCTAGGTC GGCCGGCCAT CAGAGTGGAA AGAGGGGTGA AGGTCGAGCT 1140
AGCTCTACCA GGCCCTGTGC ACTGTGGCAG GCATCTAGCC ATCCTGCCTT TCTCCTCCTT 1200
GTCGCTAGGC TAACAAACCC TTTAGGTTTA ATTGGGGAAC AAAGGTTCTG 1250