EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-14542

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr3:89226260-89226550

Target genes

Number: 33
Name	Ensembl ID

Dap3	ENSMUSG00000068921
Rusc1	ENSMUSG00000041263
Fdps	ENSMUSG00000059743
Pklr	ENSMUSG00000041237
Hcn3	ENSMUSG00000028051
Clk2	ENSMUSG00000068917
Scamp3	ENSMUSG00000028049
Gm16069	ENSMUSG00000086718
Fam189b	ENSMUSG00000032657
Gba	ENSMUSG00000028048
Thbs3	ENSMUSG00000028047
Mtx1	ENSMUSG00000064068
Muc1	ENSMUSG00000042784
Krtcap2	ENSMUSG00000042747
Trim46	ENSMUSG00000042766
Dpm3	ENSMUSG00000042737
Slc50a1	ENSMUSG00000027953
Efna1	ENSMUSG00000027954
Gm15998	ENSMUSG00000086389
Efna3	ENSMUSG00000028039
Efna4	ENSMUSG00000028040
Adam15	ENSMUSG00000028041
Gm10702	ENSMUSG00000074467
Dcst1	ENSMUSG00000042672
Gm15417	ENSMUSG00000074466
Zbtb7b	ENSMUSG00000028042
Lenep	ENSMUSG00000078173
Flad1	ENSMUSG00000042642
Cks1b	ENSMUSG00000028044
Shc1	ENSMUSG00000042626
Pygo2	ENSMUSG00000047824
Pbxip1	ENSMUSG00000042613
Pmvk	ENSMUSG00000027952

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr3:89226462-89226482	CCCCCCCCCACCCCCCCAGT	+	6.78
ZNF740	MA0753.2	chr3:89226460-89226473	CCCCCCCCCCCAC	+	6.92

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

mSE_05429	chr3:89221990-89226322	E14.5_Heart
mSE_09740	chr3:89221139-89226496	MEF
mSE_11785	chr3:89221197-89226292	Placenta

Enhancer Sequence

GGTTCGGGTG AGTGCATACC CCCCTCCCAC TCCCTCCCGT CCAGTTCCTC TGCTCACTCC 60
AGATTTGCCA GGGACTCCCT GCTCTTCCCC CAGCAACATC TGTGCCATTC TCTCAGTTCT 120
TAGACCTGGT GCATTCCTTC TTCAGGTCTC TGCCCTTAAT TTAGCCTGTG AATCTTCTGC 180
CTTTCCTCCT TTGGTCCCAA CCCCCCCCCC CACCCCCCCA GTTCACACAG TGCCCAAGCA 240
CATCTGAGGC TTTCTGTAAA AGTTGAATGA AAATGACTTC TTGATTATTC 290