EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-14485

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr3:87801270-87801550

Target genes

Number: 23
Name	Ensembl ID

4933430H15Rik	ENSMUSG00000023084
Ntrk1	ENSMUSG00000028072
Pear1	ENSMUSG00000028073
Prcc	ENSMUSG00000004895
Hdgf	ENSMUSG00000004897
Mrpl24	ENSMUSG00000019710
Isg20l2	ENSMUSG00000048039
Rrnad1	ENSMUSG00000004896
Crabp2	ENSMUSG00000004885
Nes	ENSMUSG00000004891
Bcan	ENSMUSG00000004892
Hapln2	ENSMUSG00000004894
Gpatch4	ENSMUSG00000028069
Apoa1bp	ENSMUSG00000028070
Iqgap3	ENSMUSG00000028068
Mef2d	ENSMUSG00000001419
0610031J06Rik	ENSMUSG00000001418
Tmem79	ENSMUSG00000001420
Smg5	ENSMUSG00000001415
Pmf1	ENSMUSG00000028066
Mex3a	ENSMUSG00000074480
Lamtor2	ENSMUSG00000028062
Ubqln4	ENSMUSG00000008604

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr3:87801347-87801357	GCCCCGCCCC	+	6.02
REST	MA0138.2	chr3:87801401-87801422	AGCACTGCCCAGGGTCCTGAA	-	7.08
SP1	MA0079.4	chr3:87801344-87801359	CAAGCCCCGCCCCTC	+	6.34
SP2	MA0516.2	chr3:87801343-87801360	CCAAGCCCCGCCCCTCG	+	6.39

Enhancer Sequence

TCGATCCTCT GTGGACAGGG GTCAAAGCCG GCTGCAGCCA GACGCAGGAC GTAGTGCGCC 60
TGTGCGCTTG GCTCCAAGCC CCGCCCCTCG ATCCAAGGCG CCTGGGGTGC ACTGCCCAGC 120
TCAGGGTGCT GAGCACTGCC CAGGGTCCTG AATTTGATCC TCTACCCTTA GCCTCCTGCC 180
TCGTGCTCCT TTGCAACTCT GACCCCCAAG ACTCCCCTAC TTACTAGGGT TCCCAATTCA 240
TCCCTATTTT GCAGTTGGCT CCAGCCCTTG CCCACAGCAC 280