EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-13434

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr2:154766950-154767660

Target genes

Number: 11
Name	Ensembl ID

Necab3	ENSMUSG00000027489
Gm14217	ENSMUSG00000082064
Raly	ENSMUSG00000027593
a	ENSMUSG00000027596
Eif2s2	ENSMUSG00000074656
Gm14226	ENSMUSG00000084897
Ahcy	ENSMUSG00000027597
Itch	ENSMUSG00000027598
Dynlrb1	ENSMUSG00000047459
Map1lc3a	ENSMUSG00000027602
Pigu	ENSMUSG00000038383

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr2:154767637-154767658	AAAGTGAAAATAAAAGAATAA	-	6.48
IRF1	MA0050.2	chr2:154767631-154767652	AAATAGAAAGTGAAAATAAAA	-	7.92
STAT3	MA0144.2	chr2:154767100-154767111	CTTCCCAGAAG	-	6.14
USF1	MA0093.2	chr2:154767322-154767333	ACCACGTGACC	+	6.32
USF2	MA0526.2	chr2:154767320-154767336	GTACCACGTGACCCCC	-	6.38

Enhancer Sequence

CCACACAAAG GAAGATTCAA CCCCATAAGT TGGCACTCCA GTCACCAAGA TCAGATGAAG 60
GGATCAGGTA TGTGTCAGAT GATCAACAAG ATTCACTGAG AGGAAATTGG ATGGAGTGGT 120
GAGGAGGTGA AGGCTAGGGG GAACTGGTCA CTTCCCAGAA GGGATCAAAG CCACTAAGGG 180
CTCTCTGAAG GGATGCCAGC AAGCTAAGGA AAATGTGCAA GCCCTCTCCT TATGTAGCTG 240
CATGCTTCAC AACTTTTCCA TCACTTGTTC CTGTTCAGGA CCAGTGTGGC TGCTCACCCT 300
CTGCATGAAA GGCTTTCTTA GCACATACCC CCATGGCTGG ACTCTTCCCT CTGAGATTCT 360
ATTGTTCTTT GTACCACGTG ACCCCCTTTC CTTCCTAGAA TCCCTAGTCA TTGAAATCCC 420
CTTTGTTTAC CTATCTTGGT CTCCTGTTCC CCCTGCAGTC TAAGTGCTAG GAAAGTGTCC 480
TTTGCTGCTG CCTACCCAGT GCCTACAACA TCACCCACAG AGCAGCAGGT TGATAAAAGT 540
CACAAATGAG CAGGCAGCCA GGCCTAGGAA AGTTGGCCCT AGACAGCCAG ATGAAATCGT 600
AATGGGATGC AGATGGCCAG GAGGACTATA AATGATAAGA GAGGAAATTG GGAGCAGTTA 660
CCTAAATCTC CTGGGAAGTG GAAATAGAAA GTGAAAATAA AAGAATAACC 710