EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-12185

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr2:30494880-30496090

Target genes

Number: 29
Name	Ensembl ID

Gle1	ENSMUSG00000019715
Spna2	ENSMUSG00000057738
Set	ENSMUSG00000054766
Zdhhc12	ENSMUSG00000015335
D2Wsu81e	ENSMUSG00000039660
Lrrc8a	ENSMUSG00000007476
Phyhd1	ENSMUSG00000079484
Dolk	ENSMUSG00000075419
Nup188	ENSMUSG00000052533
Sh3glb2	ENSMUSG00000026860
Fam73b	ENSMUSG00000026858
Dolpp1	ENSMUSG00000026856
Crat	ENSMUSG00000026853
Ppp2r4	ENSMUSG00000039515
Ier5l	ENSMUSG00000089762
Cstad	ENSMUSG00000047363
Gm14488	ENSMUSG00000075416
1700001O22Rik	ENSMUSG00000044320
4930527E20Rik	ENSMUSG00000085491
Mettl11a	ENSMUSG00000026857
Asb6	ENSMUSG00000039483
Prrx2	ENSMUSG00000039476
Ptges	ENSMUSG00000050737
Tor1b	ENSMUSG00000026848
Tor1a	ENSMUSG00000026849
BC005624	ENSMUSG00000026851
Usp20	ENSMUSG00000026854
Gpr107	ENSMUSG00000000194
Ncs1	ENSMUSG00000062661

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxa2	MA0047.2	chr2:30495565-30495577	CCAGAGTAAACA	-	6.11
Stat6	MA0520.1	chr2:30495578-30495593	GTTTCTGAGGAAGCG	-	6.09

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

mSE_04383	chr2:30495065-30496280	E14.5_Brain
mSE_05700	chr2:30494776-30496106	E14.5_Limb

Enhancer Sequence

CAGGAGGGAA CTGATGTTTG GTACTTCTAG TTGGGGCGAA GACCTATGGC CCCAGCAGGT 60
TGGCCCCAGC AGGTTGGCCC ACCAACTATT TTATTAAATA GATGTGGCGG GCCTCCAAAC 120
ATTTGTCTTC TAGGCATTTG TGCTTACCCC CTTGGGATAC TGATTCTGTT AGTGTCAGTC 180
ATGGGGGGAA ACTTCTCTTT TACTAGAGGC AAAGTAGAGT ACGACCAGTA ACAGGTCTGA 240
AAGTGAGTGA CTGTTGCTGC AGCATCCAGA CACAAAGGGA AGAACACCCA ACATCTCTCT 300
CACCCCACTA GGCGCTCAGG GACAACCTTC TCTGCAGAGG GAGGTGGAAG GAAGGTCATA 360
GCCAGAGGAA GGGGTGGCCG TGCTAGGAGA GGCTGCTCAG GGGTTGAGAA AAGCACCGAC 420
TGGTCTTGCA GAGACCTGTG CTCAGTTTTC AGCAGCCACA TTGGGCAGCT CACAGCCCCT 480
TTTAACTTCG GCTTCTGGGG GTCTGGTGCT TTCTACTGGG ATCCACAAAC ATTGCACTGT 540
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCATACAT AAAAGCTTTT TAATCAAAAA 600
AAAAAAATAG AAAGTAAGTA GTAAAAAGCA AACAGAAAGC AGCTGAGAAA GTTGCCAGCT 660
CCATAAGGCC CCTCTCAAAG GCCATCCAGA GTAAACAGGT TTCTGAGGAA GCGAGCGCTT 720
GTGAGTGGAG CTGCCTGCAC GCTGTGGCTG AGGATGGAGC TTTTGTGAGT CACTTACAAT 780
CCCTTGACTT CAATCCCTTG TTCCTGTTGC AGTCACCCTA GAGGCAACCA TGGGTCGATA 840
AATAACCCCT CCCCTATTGT ACGAGTCTGG TTCCTGTTGC TGTGATAAAA CTTTGGGAAG 900
GAAAACCCTT GGGAAGGAAA GGAGAGGGTT TGTGTTACAA CTCACAGTCC ATCTGTGAGG 960
GCGCCAAGGC AGGGGCTGAA GCGGAGGTGC TGCTTACAGC TCTGCCCTCC ATCCCCCCAT 1020
CCTGGCTTGC TCATCTTGCT TTCTTACGCA GCACAAGCCT ATTCGCCCAG CGGTGGGGGA 1080
GGGAGGGCAC TGCCCACAAT TCCCAGCACC GGTTCATGGC CATCTGTCAT TCCAGTTCCA 1140
GGGGACCCAA CTCCTTCTTC TAGCCTCTGA GAACACCAGC ATGCATGTAG ACAAAGCAAC 1200
TAGGCACATA 1210