EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

MM090-11277

Organism

Mus musculus

Tissue/cell

Limb_E11.5

Coordinate

chr19:4810580-4811170

Target genes

Number: 24
Name	Ensembl ID

Kdm2a	ENSMUSG00000054611
Rhod	ENSMUSG00000041845
Lrfn4	ENSMUSG00000045045
Rce1	ENSMUSG00000024889
Gm960	ENSMUSG00000071691
Spnb3	ENSMUSG00000067889
Rbm4b	ENSMUSG00000033760
Rbm14	ENSMUSG00000006456
Ccs	ENSMUSG00000034108
Ctsf	ENSMUSG00000083282
Actn3	ENSMUSG00000006457
Zdhhc24	ENSMUSG00000006463
Bbs1	ENSMUSG00000006464
Dpp3	ENSMUSG00000063904
Peli3	ENSMUSG00000024901
Mrpl11	ENSMUSG00000024902
B3gnt1	ENSMUSG00000047379
Brms1	ENSMUSG00000080268
Cd248	ENSMUSG00000056481
Tmem151a	ENSMUSG00000061451
Cnih2	ENSMUSG00000024873
Rab1b	ENSMUSG00000024870
Klc2	ENSMUSG00000024862
Pacs1	ENSMUSG00000024855

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

SP1	MA0079.4	chr19:4811106-4811121	GAGGGGCGTGGCTAA	-	6.82
SP4	MA0685.1	chr19:4811104-4811121	GTGAGGGGCGTGGCTAA	-	6.53

Enhancer Sequence

AAGGTCAAAG GGGTTCCGAA AAGGCCCCTC CCATGCCCAC AAGCAGATTC ATTCCAGACA 60
ATACTAAAAA AGCCCGAACC CGAGAAACCA AGGGCCCGCT ACCTTCCGGG AAGCATCGGG 120
AAGGAACGCC AGAGCGGCCT TGGGGCTTCA ACCCAACCTT TTCCCTTTTC CCTCGATCTG 180
ACCAAATTCT GGAGAGGAAG TGGGGAAGTG GCGAACTCTT TTCACCGCTC CATAATCCGG 240
TTGGTGCCCT TCCCTTTCCA TTTCATTTTG GTGCCAGGCT CATGCAACCA GGAAAAGGCG 300
CCTCCTCCCA ACCCCGCACA CTCGCAAATC TCTGGCGCGT CCCCAGCCCC GAGGCTTCGG 360
CTTGCAGTGG CCACTGCACC CGCCCGGAAC CGACTCCTCC CACTTGATGA ATGTTGCTGG 420
GACCGCAGGG GAGAAGGGTG GCTCTACCCA ACTCGCCCCC AGCACCTTAG GCCCCGCTCC 480
TGCACACTTC CCCATCATTC CCAACCCTGA GGACCAACCC CAGAGTGAGG GGCGTGGCTA 540
AGAGGCAGAG AGCACCGCGC GTGTCCCCTC CCGAGCGCGC TCCCGCGTTA 590